View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11835_high_94 (Length: 270)
Name: NF11835_high_94
Description: NF11835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11835_high_94 |
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Alignment Details
Target: chr6 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 14577114 - 14577373
Alignment:
| Q |
1 |
ctcaagtgcatgattattttcttgtctctcgcaatctctccatgccaaaccatatagttaattgttgaacacaaaaatagaacaatcaaaccatatagtt |
100 |
Q |
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| T |
14577114 |
ctcaagtgcatgattattttcttgtctctcgcaatctctccatgccaaaccatatagttaattgttgaacacaaaaatagaacaatcaaaccatatagtt |
14577213 |
T |
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| Q |
101 |
ctctgataaattaaacatttcattcaattcaaagtaaggcatgaagaaaatatggtcaccactaggctcaaaatcaaatatacttacccaaaagaaaata |
200 |
Q |
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| T |
14577214 |
ctctgagaaattaaacatttcattcaattcaaagtaagacatgaagaaaatacggccaccactaggctcaaaatcaaatatacttacccaaaagaaaata |
14577313 |
T |
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| Q |
201 |
ctttggtcaattatggctagcacaaagtttctctttggcatatttgaaaaattcatctca |
260 |
Q |
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| T |
14577314 |
ctttggtcaattatggctagcataaagtttctcttttgcatatttgaaaaattcttctca |
14577373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 155 - 261
Target Start/End: Original strand, 2828163 - 2828269
Alignment:
| Q |
155 |
gtcaccactaggctcaaaatcaaatatacttacccaaaagaaaatactttggtcaattatggctagcacaaagtttctctttggcatatttgaaaaattc |
254 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| | |||| | | |||||||||||| |||||| |
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| T |
2828163 |
gtcaccactaggctcaaaatcaaatatacttagccaaaagaaaaaactttggtcaattatggctagcatagtgtttatgtatggcatatttgagaaattc |
2828262 |
T |
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| Q |
255 |
atctcat |
261 |
Q |
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|||||| |
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| T |
2828263 |
ttctcat |
2828269 |
T |
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