View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11835_low_1 (Length: 1006)
Name: NF11835_low_1
Description: NF11835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11835_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 844; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 844; E-Value: 0
Query Start/End: Original strand, 1 - 986
Target Start/End: Original strand, 12121364 - 12122348
Alignment:
| Q |
1 |
aaaactactaaatcatcacacatcaaaggtaaaatacataacagctactaacaagtatagatccaaactaaaataaccacatttaggca----tactttc |
96 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |||| |||| || ||||||| |
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| T |
12121364 |
aaaactactaaatcatcacacatcaaaggtaaaatagataacagctactaacaagtatagatccaaagtaa-----ccacgtttaaccaaacatactttc |
12121458 |
T |
|
| Q |
97 |
tagtaaatccaaattgaaatcaaagcatcatttgaaactctgtaaacagtctcaaaagaccttacaaagtagtcgtcttattagtcaaagaacaagaaaa |
196 |
Q |
| |
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|||||| ||||||||||||| ||| |||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||| |
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| T |
12121459 |
tagtaa-tccaaattgaaattaaaacatcctttgaaactctgtaaacagtca-aaaagaccttacaaagtagtcatcttattagtcaaagaacatgaaaa |
12121556 |
T |
|
| Q |
197 |
ataaagctttgtttaactcatcagcatcaaatttgagctaactgcaacataaaccaaatctatttatctatccatctatctgcttaaagaaa--tcttcc |
294 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||| |
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| T |
12121557 |
ataaagctttgtttaactcatcagcatcaaatttgagctaattgcaacattaaccatatctatttatctatccatctatctgcttaaagaaaaatcttcc |
12121656 |
T |
|
| Q |
295 |
gctaatatacatcgcggaactttacacttacatttcctgtcatttgttccctacatcagtgcaatctttcacgagatctttaccagtgataatcactctt |
394 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
12121657 |
gctaatatacatcgcggaattttacacttacatttcctgtcatttgttccctacatcagtgcaatctttcacgagagctttaccagtgataatcactctt |
12121756 |
T |
|
| Q |
395 |
tctcacttagcattcagcattcatctttagaaacattgtttccagcatcacctaaaccagccaaaacatccttaacaaacttaattaaagaacaaagacc |
494 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
12121757 |
tctcacttagcattcaacattcatctttagaaacattgtttccagcatcacctaaaccagccaaaacatccttaacaaacttaattaaagaacaaagacc |
12121856 |
T |
|
| Q |
495 |
ccctaagaaattatgatcaatagcacctttagcatcaaccacgtgagcaaaatcaattagcttaacaacagcacgtgcactctttttctcatcctccttt |
594 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
12121857 |
ccctaagaaattatgatcaatagcacctttagcatcaaccacgtgagcaaaatcaataagcttaacaacagcacgtgcactctttttctcattctccttt |
12121956 |
T |
|
| Q |
595 |
tcatctttttcataaaccacaagaacagaacacgaataaaaatgaaaaatagtttgaacttcaaaccatttcttaagctccaacaattcctccaaaacag |
694 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
12121957 |
tcatctttttcataaaccacaagaacagaacacgaataaaaatgaaaaatagtttgaacttcaaaccatttcttaagctccaacaattcctccaaaacag |
12122056 |
T |
|
| Q |
695 |
gaacaaaaaccctagacccaaaaacaacatcaggttcatcaacatcaccatccgacgaaacaaatttcctcaaaaccaacatcacatcatcagcagatag |
794 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
12122057 |
gaacaaaaaccctagacccaaaaacaacatcaggttcatcaacatcaccatccgacgaaacaaatttcctcaaaaccaacatcacatcatcagcagatag |
12122156 |
T |
|
| Q |
795 |
atccataagaagctttctatgaggctgccataatttgttactgggacccacagacctcaacccagagattctaaaccctaattttatcgtagaagattct |
894 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
12122157 |
atccataagaagctttctatgaggctgccataatttgttactgggacccacagacctcaacccagagattctaaaccctaattttatcgtagaagattct |
12122256 |
T |
|
| Q |
895 |
cgatctttctggaggcatttccgaatgtaatcttcggaggattgagggtgccatgttcgagaaccaatcttgatgtcgacgacagcggcgtt |
986 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
12122257 |
cgatctttctggaggcatttccgaatataatcttcggaggattgaggttgccatgttcgagaaccaatcttgatgtcgacgacagcggcgtt |
12122348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 450 - 977
Target Start/End: Original strand, 14691331 - 14691858
Alignment:
| Q |
450 |
accagccaaaacatccttaacaaacttaattaaagaacaaagaccccctaagaaattatgatcaatagcacctttagcatcaaccacgtgagcaaaatca |
549 |
Q |
| |
|
||||| |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
14691331 |
accagtcaaaacatccttaacaaacttaatcaaagaacagagaccccctaagaaattatgatcaatagcacctttagcatcaaccacatgagcaaaatca |
14691430 |
T |
|
| Q |
550 |
attagcttaacaacagcacgtgcactctttttctcatcctccttttcatctttttcataaaccacaagaacagaacacgaataaaaatgaaaaatagttt |
649 |
Q |
| |
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| |||||||||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
14691431 |
acaagcttaacaacagcacttgcactcttcttctcatcctccttttcatctttctcataaaccacaagaacagaacatgaataaaaatgaaaaatagttt |
14691530 |
T |
|
| Q |
650 |
gaacttcaaaccatttcttaagctccaacaattcctccaaaacaggaacaaaaaccctagacccaaaaacaacatcaggttcatcaacatcaccatccga |
749 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||||| ||||||||||||||||| ||| || || |
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|
| T |
14691531 |
gaacttcaaaccatttcttaagctccaataattcctccaaaataggaacaaacaccctagacccaaaaacacaatcaggttcatcaacattaccgtctga |
14691630 |
T |
|
| Q |
750 |
cgaaacaaatttcctcaaaaccaacatcacatcatcagcagatagatccataagaagctttctatgaggctgccataatttgttactgggacccacagac |
849 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |||||||||||||||||| ||| |||||||||| ||| |
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|
| T |
14691631 |
agaaacaaatttcctcaaaaccaacatcacatcatcaacagatagatccataagaaactttttatgaggctgccataattgattagtgggacccactgac |
14691730 |
T |
|
| Q |
850 |
ctcaacccagagattctaaaccctaattttatcgtagaagattctcgatctttctggaggcatttccgaatgtaatcttcggaggattgagggtgccatg |
949 |
Q |
| |
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||||| || |||||||||||||||||||| || |||||||||||||||||||||||||||||||||| ||||||||||| ||||| || |||||||||| |
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| T |
14691731 |
ctcaaaccggagattctaaaccctaatttgatactagaagattctcgatctttctggaggcatttccggatgtaatcttcagaggactgtgggtgccatg |
14691830 |
T |
|
| Q |
950 |
ttcgagaaccaatcttgatgtcgacgac |
977 |
Q |
| |
|
|||| ||||| ||||||||||||||||| |
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|
| T |
14691831 |
ttcgtgaaccgatcttgatgtcgacgac |
14691858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 111 - 268
Target Start/End: Complemental strand, 14670180 - 14670021
Alignment:
| Q |
111 |
tgaaatcaaagcatcatttgaaactctgtaaa-cagtctcaaaagaccttacaaagt-agtcgtcttattagtcaaagaacaagaaaaataaagctttgt |
208 |
Q |
| |
|
|||||| ||||||||||||||||| || ||| |||| || |||||||||| ||| | | || ||||| ||||||| |||| ||||||||||||||||| |
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|
| T |
14670180 |
tgaaattaaagcatcatttgaaacaatgcaaaacagtgtcgaaagaccttataaaatcaatcaacttataagtcaaataacatgaaaaataaagctttgt |
14670081 |
T |
|
| Q |
209 |
ttaactcatcagcatcaaatttgagctaactgcaacataaaccaaatctatttatctatc |
268 |
Q |
| |
|
|||| ||| || |||||| ||||||| | ||||||||| ||| ||| ||| |||||||| |
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|
| T |
14670080 |
ttaagtcaacaaaatcaaacttgagctgattgcaacatataccgaatatatctatctatc |
14670021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 102 - 244
Target Start/End: Original strand, 14643107 - 14643252
Alignment:
| Q |
102 |
aatccaaa-ttgaaatcaaagcatcatttgaaactctgtaaa-cagtctcaaaagaccttacaaagt-agtcgtcttattagtcaaagaacaagaaaaat |
198 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||||| || ||| |||| || |||||||||||||| | |||| ||||| ||||||| |||| ||||||| |
|
|
| T |
14643107 |
aatccaaacttgaaattaaagcatcatttgaaacaatgcaaaacagtgtcgaaagaccttacaaaatcagtcaacttataagtcaaataacatgaaaaat |
14643206 |
T |
|
| Q |
199 |
aaagctttgtttaactcatcagcatcaaatttgagctaactgcaac |
244 |
Q |
| |
|
||||||| ||| || ||| || |||||| ||||||| | |||||| |
|
|
| T |
14643207 |
aaagcttcgttcaagtcaacaaaatcaaacttgagctgattgcaac |
14643252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 160
Target Start/End: Original strand, 14691093 - 14691146
Alignment:
| Q |
107 |
aaattgaaatcaaagcatcatttgaaactctgtaaacagtctcaaaagacctta |
160 |
Q |
| |
|
|||||||||| |||||||||| |||||||||||||| | ||||||||||||| |
|
|
| T |
14691093 |
aaattgaaattaaagcatcatctgaaactctgtaaaacttttcaaaagacctta |
14691146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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