View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11835_low_10 (Length: 619)
Name: NF11835_low_10
Description: NF11835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11835_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 261; Significance: 1e-145; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 305 - 573
Target Start/End: Complemental strand, 5794580 - 5794313
Alignment:
| Q |
305 |
tatctttatcatggagaactattatgctcacctaccacttagcaaaacccgatcaaaaacaaaaatcacttagcaaaacgattaattatttgtagtcgcc |
404 |
Q |
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| T |
5794580 |
tatctttatcatggagaactattatgctcacctaccacttagcaaaacccgatcaaaaa-aaaaatcacttagcaaaacgattaattatttgtagtcgcc |
5794482 |
T |
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| Q |
405 |
atcacattattgacataaaaaatctgcattaaactttagttgcaatgtccattcaaaatgtgattgttgatacgttgattaccacgattgtgactaccat |
504 |
Q |
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| T |
5794481 |
atcacattattgacataaaaaatctgcattaaactttagttgcaatgtccattcaaaatgtgattgttgatacgttgattaccacgattgtgactaccat |
5794382 |
T |
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| Q |
505 |
atatgttatatttatattcatcatatatacacattgctttgtatgtataaatttgaatttcatatgaag |
573 |
Q |
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| T |
5794381 |
atatgttatatttatattcatcatatatacacattgctttgtatgtataaatttgaatttcatatgaag |
5794313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 15 - 242
Target Start/End: Complemental strand, 5795680 - 5795453
Alignment:
| Q |
15 |
atgaaccgaaatgttgctggttttcgagggtgaaggaaacggaagacaacctatttgcaaagtgtgagtttgcgaatgaaatttggtataagatttttca |
114 |
Q |
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| T |
5795680 |
atgaaccgaaatgttgctggttttcgagggtgaaggaaacggaagacaacccatttgcaaagtgtgagtttgcgaatgaaatttggtataagatttttca |
5795581 |
T |
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| Q |
115 |
ttggttaggcgtatccatgatacggtttggggacctcttttgtcttgctagaaaattgttgtttatgtcttaggaaaaataagaaagtcaaggggttgct |
214 |
Q |
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| T |
5795580 |
ttggttaggcgtatccatgatacggtttggggacctcttttgtcttgctagaaaattgttgtttatgtcttaggaaaaataagaaagccaaggggttgct |
5795481 |
T |
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| Q |
215 |
tctataaccatgccttggcagtggtttg |
242 |
Q |
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| T |
5795480 |
tctataaccatgccttggcagtggtttg |
5795453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 280 - 313
Target Start/End: Complemental strand, 5795461 - 5795428
Alignment:
| Q |
280 |
agtggtttgttaatcgattgtaatgtatctttat |
313 |
Q |
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| T |
5795461 |
agtggtttgttaatcgattgtaatgtatctttat |
5795428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 102
Target Start/End: Complemental strand, 13370022 - 13369935
Alignment:
| Q |
15 |
atgaaccgaaatgttgctggttttcgagggtgaaggaaacggaagacaacctatttgcaaagtgtgagtttgcgaatgaaatttggta |
102 |
Q |
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| T |
13370022 |
atgaaccgaattgttgttggtgtcccggggtgaaggaaacggaggaccacctattcacaaaatgtgagtttgcaagtgcaatttggta |
13369935 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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