View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11835_low_100 (Length: 255)
Name: NF11835_low_100
Description: NF11835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11835_low_100 |
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Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 3 - 248
Target Start/End: Original strand, 40721950 - 40722195
Alignment:
| Q |
3 |
cagaagcaaaggaatatagaaatagcagtatgactcgacttgtcgaggaaaacggaaccagggtgaatatttgatcaacaacaaaggtctttaattttga |
102 |
Q |
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| T |
40721950 |
cagaaccagaggaatacggaaatagcggtatgactcgacttgtcgtggaaaacgaaaccagggtgaatatttgatcaacaacaaaggtctttaattttga |
40722049 |
T |
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| Q |
103 |
gaattggaaggaaatcaatatagaatctaaaactacctctattttgtgatggatcttgcaagaacataaccatgtttatggtggtaagagctatagaaaa |
202 |
Q |
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| T |
40722050 |
gaattggaaggaaatcaatataaaatctaaaactacctctattttgtgatggatcttgcaagaacataaccatgtttatggtggtaagagctatagaaaa |
40722149 |
T |
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| Q |
203 |
gcatgggaaaaagacggctagagaacaaaagaagaagagggtgttt |
248 |
Q |
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| T |
40722150 |
gcatgggaaaaagacagctagagaacaaaagaagaagagggtgttt |
40722195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 20 - 248
Target Start/End: Original strand, 16003623 - 16003851
Alignment:
| Q |
20 |
agaaatagcagtatgactcgacttgtcgaggaaaacggaaccagggtgaatatttgatcaacaacaaaggtctttaattttgagaattggaaggaaatca |
119 |
Q |
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| T |
16003623 |
agaaatagcggtatgactcgacttgtggaggaaaatggaaccagggtgaatatttgatcaacaacaaaggtctttaattttgagaattgaaaggaaatca |
16003722 |
T |
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| Q |
120 |
atatagaatctaaaactacctctattttgtgatggatcttgcaagaacataaccatgtttatggtggtaagagctatagaaaagcatgggaaaaagacgg |
219 |
Q |
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| T |
16003723 |
atataaaatctaaaactacctctattttgtgatggatcttgcaagaacagaaccatgtttatggtggtaagagctatagaaaagcatgggaaaaagacag |
16003822 |
T |
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| Q |
220 |
ctagagaacaaaagaagaagagggtgttt |
248 |
Q |
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| T |
16003823 |
ctagagaataaaagaagaagagggtgttt |
16003851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 22 - 240
Target Start/End: Original strand, 26795005 - 26795223
Alignment:
| Q |
22 |
aaatagcagtatgactcgacttgtcgaggaaaacggaaccagggtgaatatttgatcaacaacaaaggtctttaattttgagaattggaaggaaatcaat |
121 |
Q |
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||||||| |||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26795005 |
aaatagcggtatgactcgacttgtggaggaaaacggaactagggtgaatatttgatcaacaacaaaggtctttaattttgagaattggaaggaaatcaat |
26795104 |
T |
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| Q |
122 |
atagaatctaaaactacctctattttgtgatggatcttgcaagaacataaccatgtttatggtggtaagagctatagaaaagcatgggaaaaagacggct |
221 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |||||||||||||||||||||| ||| |
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| T |
26795105 |
atagaatctaaaactacctctattttgtgatggatcttgcaagaacagaaccatgtttatggtggtaacagctgtagaaaagcatgggaaaaagacagct |
26795204 |
T |
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| Q |
222 |
agagaacaaaagaagaaga |
240 |
Q |
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| T |
26795205 |
agagaacaaaagaagaaga |
26795223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 153; Significance: 3e-81; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 72 - 248
Target Start/End: Complemental strand, 27222063 - 27221887
Alignment:
| Q |
72 |
tttgatcaacaacaaaggtctttaattttgagaattggaaggaaatcaatatagaatctaaaactacctctattttgtgatggatcttgcaagaacataa |
171 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
27222063 |
tttgatcaacaacaaaggtctttaattttgagaattggaaggaaatcaatatagaatctaaaactacctctattttgtgatggatcttgcaagaacagaa |
27221964 |
T |
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| Q |
172 |
ccatgtttatggtggtaagagctatagaaaagcatgggaaaaagacggctagagaacaaaagaagaagagggtgttt |
248 |
Q |
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|||| |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| ||||| |
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| T |
27221963 |
ccatatttatggtggtaagagctgcagaaaagcatgggaaaaagacagctagagaacaaaagaagaagaggttgttt |
27221887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 2 - 71
Target Start/End: Complemental strand, 27222891 - 27222822
Alignment:
| Q |
2 |
gcagaagcaaaggaatatagaaatagcagtatgactcgacttgtcgaggaaaacggaaccagggtgaata |
71 |
Q |
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|||||| || ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
27222891 |
gcagaaccagaggaatacagaaatagcagtatgactcgacttgtggaggaaaacggaaccagggtgaata |
27222822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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