View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11835_low_102 (Length: 252)
Name: NF11835_low_102
Description: NF11835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11835_low_102 |
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Alignment Details
Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 36238931 - 36239153
Alignment:
| Q |
18 |
tcttctgttttcctggatcnnnnnnncaacaaagatgttgcttgatcaaagttattcactttggtagatcgcaaagaggatggatcaaggaatttccttg |
117 |
Q |
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| T |
36238931 |
tcttctgttttcctggatcaaaaaaacaacaaagatgctgcttgatcaaagttattcactttggtagatcgcaaagaggatggatcaaggaatttccttg |
36239030 |
T |
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| Q |
118 |
ttgagaataagtttgatcactaaattcttttgataaatcagcattactaagttctttatgtaatgatgatggcatttgctgtattgatatacattggtga |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36239031 |
ttgagaataagtttgatcactaaattcttttgataaatcagcattactaagttctttatgtaatgatgatggcatttgctgtattgatatacattggtga |
36239130 |
T |
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| Q |
218 |
tcacataaatccaattaatcctt |
240 |
Q |
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||||||||||||||||||||||| |
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| T |
36239131 |
tcacataaatccaattaatcctt |
36239153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 82; Significance: 8e-39; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 94 - 195
Target Start/End: Original strand, 20969138 - 20969239
Alignment:
| Q |
94 |
aggatggatcaaggaatttccttgttgagaataagtttgatcactaaattcttttgataaatcagcattactaagttctttatgtaatgatgatggcatt |
193 |
Q |
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|||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |
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| T |
20969138 |
aggatggatcaaagaacttccttgttgagaataagtttggtcactaaattcttttgataaatcagcattgctaagttctttatgtaatgatgattgcatt |
20969237 |
T |
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| Q |
194 |
tg |
195 |
Q |
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|| |
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| T |
20969238 |
tg |
20969239 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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