View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11835_low_103 (Length: 250)
Name: NF11835_low_103
Description: NF11835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11835_low_103 |
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Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 12 - 236
Target Start/End: Original strand, 35814227 - 35814457
Alignment:
| Q |
12 |
gagaagaaaagcactaagacataggccccacgttaggtcctttcaaaagaccacaagtcgtgattttcatctttgtttctccttctccactgcacc---- |
107 |
Q |
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| T |
35814227 |
gagaagaaaagcacttagacataggccccacgttaggtcctttcaaaagaccacaagtcgtgattttcatctttgtttctccttctccactgcaccaaca |
35814326 |
T |
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| Q |
108 |
--aacaccaacaccaatacaatacattcattctttcaccttaccctgtcaaccacaaaacatgtcttcttcctcttcccaaatcgaaaactcttctcttc |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35814327 |
ccaacaccaacaccaatacaatacattcattctttcaccttaccctgtcaaccacaaaacatgtcttcttcctcttcccaaatcgaaaactcttctcttc |
35814426 |
T |
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| Q |
206 |
acgcatcttcttccaaatccaatcatcatca |
236 |
Q |
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|| |||||||||||||||||||||||||||| |
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| T |
35814427 |
acccatcttcttccaaatccaatcatcatca |
35814457 |
T |
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