View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11835_low_105 (Length: 250)
Name: NF11835_low_105
Description: NF11835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11835_low_105 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 9 - 250
Target Start/End: Complemental strand, 16380553 - 16380312
Alignment:
| Q |
9 |
aagaaataacatcgggtttttagtgtcttattgtcaccattttagagtaaaaagtagttagtaaagtaatctcattcaaaaagtcatgaaagagcaacaa |
108 |
Q |
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| T |
16380553 |
aagaaataatatagggtttttagtgtcttattgtcaccattttagagtaaaaagtagttagtaaagtaatctcattcaaaaagtcatgaaagagcaacaa |
16380454 |
T |
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| Q |
109 |
tgtgaaaaatactttgaaacaagtaaaaattaccaaaccagacaacttcataattgtactatgcttactataagttttagcatgttaattcttggggtat |
208 |
Q |
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| T |
16380453 |
tatgaaaaatactttgaaacaagtaaaaattaccaaaccagacaactttataactgtactatgcttactataagttttagcatgttaattcttggggtat |
16380354 |
T |
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| Q |
209 |
agtcattaccgacgtttcggtgatgagaaataagacagagaa |
250 |
Q |
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| T |
16380353 |
agtcattaccgacatttcggtgatgagaaataagacagagaa |
16380312 |
T |
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Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 80 - 237
Target Start/End: Original strand, 24695369 - 24695525
Alignment:
| Q |
80 |
tcattcaaaaagtcatgaaagagcaacaatgtgaaaaatactttgaaacaagtaaaaattacc-aaaccagacaacttcataattgtactatgcttacta |
178 |
Q |
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| T |
24695369 |
tcattcaaaaagtcatgaaagagcaacaatggaaaaaagaccttgaaacatgtcaaagtcacccaaaccaaacaactc--tgatggaattgtgcttatta |
24695466 |
T |
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| Q |
179 |
taagttttagcatgttaattcttggggtatagtcattaccgacgtttcggtgatgagaa |
237 |
Q |
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| T |
24695467 |
caagttttatcatgttaattcttggggtatagtcattacgaatgttttggtgatgagaa |
24695525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 84 - 216
Target Start/End: Original strand, 12353912 - 12354045
Alignment:
| Q |
84 |
tcaaaaagtcatgaaagagcaacaatgtgaaaaatactttgaaacaagtaaaaattacc-aaaccagacaacttcataattgtactatgcttactataag |
182 |
Q |
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| T |
12353912 |
tcaaaaagtcttgaaagagcaacaatgggaaaaggacattgaaagatgtcaaagtcacgtaaaccagacaacctcataaccttactatacttattacaag |
12354011 |
T |
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| Q |
183 |
ttttagcatgttaattcttggggtatagtcatta |
216 |
Q |
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| T |
12354012 |
ttttatcatgttaattcttgtggtatagtcatta |
12354045 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 162 - 212
Target Start/End: Original strand, 1594272 - 1594322
Alignment:
| Q |
162 |
ttgtactatgcttactataagttttagcatgttaattcttggggtatagtc |
212 |
Q |
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| T |
1594272 |
ttgtactatgcttgctcgaagttttagcatgttaattcttggggtatagtc |
1594322 |
T |
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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 217
Target Start/End: Original strand, 11112142 - 11112191
Alignment:
| Q |
168 |
tatgcttactataagttttagcatgttaattcttggggtatagtcattac |
217 |
Q |
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| T |
11112142 |
tatgcttactacaagttttatcatgttagttcttggagtatagtccttac |
11112191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 245
Target Start/End: Complemental strand, 1037200 - 1037096
Alignment:
| Q |
141 |
ccaaaccagacaacttcataattgtactatgcttactataagttttagcatgttaattcttggggtatagtcattaccgacgtttcggtgatgagaaata |
240 |
Q |
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| T |
1037200 |
ccaaactagacaactttgtgactgtactatgcttattacaagttttgacatgttaaattttggggcatagttattatagacgtttcagtgaggataaatg |
1037101 |
T |
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| Q |
241 |
agaca |
245 |
Q |
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| T |
1037100 |
agaca |
1037096 |
T |
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