View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11835_low_106 (Length: 248)
Name: NF11835_low_106
Description: NF11835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11835_low_106 |
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Alignment Details
Target: chr6 (Bit Score: 109; Significance: 6e-55; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 4 - 124
Target Start/End: Complemental strand, 5646491 - 5646371
Alignment:
| Q |
4 |
ctaaacattcacaaagctgaatttcaacgttaatcataaatcaattaaaagcggtcaacaatgaacaaaattaagaataaagattaaataagttgccata |
103 |
Q |
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| T |
5646491 |
ctaaacattcacaaagctgaatttcaacgttaatcataaatcgattaaaagcggtcaacaatgaacaaaattaagaataaagattaaataagttcccata |
5646392 |
T |
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| Q |
104 |
agtatattacttgaccatttt |
124 |
Q |
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| T |
5646391 |
agtatattacttaaccatttt |
5646371 |
T |
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Target: chr6; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 184 - 242
Target Start/End: Complemental strand, 5646338 - 5646280
Alignment:
| Q |
184 |
tgattttcaaatatttaggtcacgaatgcaccaaatcaacgtataaacattcacattga |
242 |
Q |
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||||||| ||||||||||||||||||||| |||||||||||||||||||||| |||||| |
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| T |
5646338 |
tgattttaaaatatttaggtcacgaatgcgccaaatcaacgtataaacattctcattga |
5646280 |
T |
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