View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11835_low_114 (Length: 240)
Name: NF11835_low_114
Description: NF11835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11835_low_114 |
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Alignment Details
Target: chr2 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 39349754 - 39349979
Alignment:
| Q |
1 |
gcattgcctaataaatcatatgtcattgtcatggatatttcactttatacaattaatttcattttattatgaatgaaaggtgcnnnnnnnnnnntcatta |
100 |
Q |
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| T |
39349754 |
gcattgcctaataaatcat--gtcattgtcatggatatttcactttatacaattaatttcattttattatgaatgaaaggtgcaaaaaaaaaaatcatca |
39349851 |
T |
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| Q |
101 |
ttattccatcttcctaattgtaattaggccacttgattgtctcctccatgcaaagccttttctagtgaagctctagcaatggacttgtattcttcaagtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39349852 |
ttattccatcttcctaattgtaattaggccacttgattgtctcctccatgcaaagccttttctagtgaagctctagcaatggacttgtattcttcaagtt |
39349951 |
T |
|
| Q |
201 |
tatccatttccattgacccaagtttctg |
228 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
39349952 |
tatccatttccattgacccaagtttctg |
39349979 |
T |
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