View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11835_low_116 (Length: 239)
Name: NF11835_low_116
Description: NF11835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11835_low_116 |
 | |
|
| [»] chr8 (2 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 16 - 239
Target Start/End: Complemental strand, 549858 - 549637
Alignment:
| Q |
16 |
aaaaacatgcatagccatgattccttttgtccaggactaagccacttaatcccatttgtagagtttgcaaaactacttgttcttcatcacaacaatttcc |
115 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
549858 |
aaaaacatgcatagccatgattcctt--gtccaggactaagccacttaatcccatttgtagagtttgcaaaactacttgttcttcatcacaacaatttcc |
549761 |
T |
|
| Q |
116 |
atgtcactttcctcattccaactcttggttctcctacaccatccaccaaatctatcttaaactctcttccaccaaacattgattttacattccttcctca |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
549760 |
atgtcactttcctcattccaactcttggttctcctacaccatccaccaaatctatcttaaactctcttccaccaaacattgattttacattccttcctca |
549661 |
T |
|
| Q |
216 |
gatcaatatccaagaccttcctcc |
239 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
549660 |
gatcaatatccaagaccttcctcc |
549637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 16 - 239
Target Start/End: Original strand, 23422770 - 23422991
Alignment:
| Q |
16 |
aaaaacatgcatagccatgattccttttgtccaggactaagccacttaatcccatttgtagagtttgcaaaactacttgttcttcatcacaacaatttcc |
115 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23422770 |
aaaaacatgcatagccatgattcctt--gtccaggactaagccacttaattccatttgtagagtttgcaaaactacttgttcttcatcacaacaatttcc |
23422867 |
T |
|
| Q |
116 |
atgtcactttcctcattccaactcttggttctcctacaccatccaccaaatctatcttaaactctcttccaccaaacattgattttacattccttcctca |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23422868 |
atgtcactttcctcattccaactcttggttctcctacaccatctaccaaatccatcttaaactctcttccaccaaacattgattttacattccttcctca |
23422967 |
T |
|
| Q |
216 |
gatcaatatccaagaccttcctcc |
239 |
Q |
| |
|
||||||||||| ||||||||||| |
|
|
| T |
23422968 |
tatcaatatccaggaccttcctcc |
23422991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University