View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11835_low_12 (Length: 592)
Name: NF11835_low_12
Description: NF11835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11835_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 497; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 18 - 578
Target Start/End: Original strand, 2394404 - 2394964
Alignment:
| Q |
18 |
aaaatgagtgttaagatcacttttgctaacattatgcaaggttgttaaaacctatgttttagggctcgttaggagaagatatcatggttaagagggattt |
117 |
Q |
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| T |
2394404 |
aaaatgagtgttgagatcacttttgctaacattatgcaaagttgttaaaacctatgttttagggctcgttaggagaagatatcatggctaagagggattt |
2394503 |
T |
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| Q |
118 |
aaatctagagagattttcccagagttgtgttattgggacacatttttctacatcgtagttgacatcaggtcaaatacatagtaggtttgtgtgtgcatga |
217 |
Q |
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| T |
2394504 |
aaatatagagagattttcccggagttgtgttattgggacacatttttctacatcgtagttgacttcaggtcaaatacatagtaggtttgtgtgtgcatga |
2394603 |
T |
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| Q |
218 |
aagccaaaacaagctaaacaaaaacatattccaagtgtattgtgtacggtggcggttgtcatcttttgtgtttgccaaatcatttctcattttgcaatca |
317 |
Q |
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| T |
2394604 |
aagccaaaacaagctaaacaaaaacatattccaagtgtattgtatacggcggcggttgtcatcttttgtgtttgccaaatcatttctcattttgcaatca |
2394703 |
T |
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| Q |
318 |
aatattttagtaggtctcatctaaaagggattttacacttatctattttgaagttgaacttagacatgtacatgttggatttgtagaaatctttcgaata |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2394704 |
aatattttagtaggtctcatctaaaagggattttacacttatctattttgaagttgaacttagacatgtacatgttggatttgtagaaatctttcgaata |
2394803 |
T |
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| Q |
418 |
tgtttgaaaattgaatagatatgtttaatagtgtaatggttaaaagatatgccttagatcagaaggttctaggtttgagttgcactataaatattgaaga |
517 |
Q |
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| T |
2394804 |
tgtttgaaaattgaatagataggtttaatagtgtaatggttaaaagatatgccttagattagaaggttctaggtttgggttccactttaaatattgaaca |
2394903 |
T |
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| Q |
518 |
aagatatttgtaagcacgttctgaattctaagggttttcctaccttatattagggcttcat |
578 |
Q |
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| T |
2394904 |
aagatatttgtaagcacgttctgaattctaagggttttcctaccttatactagagcttcat |
2394964 |
T |
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