View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11835_low_120 (Length: 238)

Name: NF11835_low_120
Description: NF11835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11835_low_120
NF11835_low_120
[»] chr4 (3 HSPs)
chr4 (1-86)||(38872574-38872659)
chr4 (15-83)||(30514368-30514436)
chr4 (183-221)||(38872443-38872481)
[»] chr2 (6 HSPs)
chr2 (4-86)||(38695369-38695451)
chr2 (2-81)||(4824236-4824315)
chr2 (15-83)||(41514962-41515030)
chr2 (15-81)||(5197850-5197916)
chr2 (15-82)||(41702218-41702285)
chr2 (15-81)||(615426-615492)
[»] chr8 (7 HSPs)
chr8 (1-83)||(9819668-9819750)
chr8 (15-83)||(10739717-10739785)
chr8 (15-83)||(36100758-36100826)
chr8 (15-82)||(35485398-35485465)
chr8 (15-82)||(36020482-36020549)
chr8 (15-84)||(6057513-6057582)
chr8 (165-221)||(9819575-9819628)
[»] chr5 (3 HSPs)
chr5 (15-83)||(42461225-42461293)
chr5 (15-81)||(12694216-12694282)
chr5 (15-81)||(12694512-12694578)
[»] chr3 (3 HSPs)
chr3 (15-83)||(34575493-34575561)
chr3 (15-81)||(24833093-24833159)
chr3 (15-81)||(49766563-49766629)
[»] chr1 (3 HSPs)
chr1 (15-83)||(23775171-23775239)
chr1 (15-82)||(43467541-43467608)
chr1 (15-79)||(43466646-43466710)
[»] scaffold0350 (1 HSPs)
scaffold0350 (15-84)||(16938-17007)
[»] scaffold0016 (1 HSPs)
scaffold0016 (28-71)||(38511-38554)


Alignment Details
Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 38872659 - 38872574
Alignment:
Q  1 caacaagatgggtgtgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgcattcac 86  Q
    |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38872659 caacaagatgcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgcattcac 38872574  T

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Target: chr4; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 15 - 83
Target Start/End: Original strand, 30514368 - 30514436
Alignment:
Q  15 tgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgcatt 83  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30514368 tgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgcatt 30514436  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 183 - 221
Target Start/End: Complemental strand, 38872481 - 38872443
Alignment:
Q  183 ctttatttagtactctgaacttttttacttgtcgttttc 221  Q
    |||||||||||||||||||||||||||||||||||||||    
T  38872481 ctttatttagtactctgaacttttttacttgtcgttttc 38872443  T

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Target: chr2 (Bit Score: 75; Significance: 1e-34; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 4 - 86
Target Start/End: Original strand, 38695369 - 38695451
Alignment:
Q  4 caagatgggtgtgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgcattcac 86  Q
    ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38695369 caagatgcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgcattcac 38695451  T

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Target: chr2; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 2 - 81
Target Start/End: Complemental strand, 4824315 - 4824236
Alignment:
Q  2 aacaagatgggtgtgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgca 81  Q
    ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4824315 aacaagatgcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgca 4824236  T

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Target: chr2; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 15 - 83
Target Start/End: Original strand, 41514962 - 41515030
Alignment:
Q  15 tgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgcatt 83  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41514962 tgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgcatt 41515030  T

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Target: chr2; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 15 - 81
Target Start/End: Complemental strand, 5197916 - 5197850
Alignment:
Q  15 tgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgca 81  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5197916 tgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgca 5197850  T

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Target: chr2; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 15 - 82
Target Start/End: Complemental strand, 41702285 - 41702218
Alignment:
Q  15 tgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgcat 82  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  41702285 tgtagtccaacggttaggataattgccttccaagcaatagacccgggtttgactcccggcaaacgcat 41702218  T

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Target: chr2; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 15 - 81
Target Start/End: Original strand, 615426 - 615492
Alignment:
Q  15 tgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgca 81  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  615426 tgtagtccaacggttaggataattgccttccaagcaatagatccgggttcgactcccggcaaacgca 615492  T

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Target: chr8 (Bit Score: 71; Significance: 3e-32; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 9819750 - 9819668
Alignment:
Q  1 caacaagatgggtgtgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgcatt 83  Q
    |||||| ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9819750 caacaaaatgcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgcatt 9819668  T

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Target: chr8; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 15 - 83
Target Start/End: Original strand, 10739717 - 10739785
Alignment:
Q  15 tgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgcatt 83  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10739717 tgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgcatt 10739785  T

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Target: chr8; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 15 - 83
Target Start/End: Complemental strand, 36100826 - 36100758
Alignment:
Q  15 tgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgcatt 83  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36100826 tgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgcatt 36100758  T

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Target: chr8; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 15 - 82
Target Start/End: Original strand, 35485398 - 35485465
Alignment:
Q  15 tgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgcat 82  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35485398 tgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgcat 35485465  T

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Target: chr8; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 15 - 82
Target Start/End: Complemental strand, 36020549 - 36020482
Alignment:
Q  15 tgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgcat 82  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||    
T  36020549 tgtagtccaacggttaggataattgccttccaagcaatagacctgggttcgactcctggcaaacgcat 36020482  T

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Target: chr8; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 15 - 84
Target Start/End: Complemental strand, 6057582 - 6057513
Alignment:
Q  15 tgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgcattc 84  Q
    ||||||||||| ||| | ||||||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  6057582 tgtagtccaacagttggaataattgccttccaagcaatagacctgggttagactcccggcaaacgcattc 6057513  T

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Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 165 - 221
Target Start/End: Complemental strand, 9819628 - 9819575
Alignment:
Q  165 ttctggctttagatcaacctttatttagtactctgaacttttttacttgtcgttttc 221  Q
    |||||||||||||||||||||||||   |||||| ||||||||||||||||||||||    
T  9819628 ttctggctttagatcaacctttatt---tactctaaacttttttacttgtcgttttc 9819575  T

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Target: chr5 (Bit Score: 69; Significance: 4e-31; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 15 - 83
Target Start/End: Complemental strand, 42461293 - 42461225
Alignment:
Q  15 tgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgcatt 83  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42461293 tgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgcatt 42461225  T

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Target: chr5; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 15 - 81
Target Start/End: Complemental strand, 12694282 - 12694216
Alignment:
Q  15 tgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgca 81  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12694282 tgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgca 12694216  T

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Target: chr5; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 15 - 81
Target Start/End: Complemental strand, 12694578 - 12694512
Alignment:
Q  15 tgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgca 81  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12694578 tgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgca 12694512  T

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Target: chr3 (Bit Score: 69; Significance: 4e-31; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 15 - 83
Target Start/End: Complemental strand, 34575561 - 34575493
Alignment:
Q  15 tgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgcatt 83  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34575561 tgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgcatt 34575493  T

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Target: chr3; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 15 - 81
Target Start/End: Complemental strand, 24833159 - 24833093
Alignment:
Q  15 tgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgca 81  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24833159 tgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgca 24833093  T

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Target: chr3; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 15 - 81
Target Start/End: Complemental strand, 49766629 - 49766563
Alignment:
Q  15 tgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgca 81  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49766629 tgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgca 49766563  T

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Target: chr1 (Bit Score: 69; Significance: 4e-31; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 15 - 83
Target Start/End: Original strand, 23775171 - 23775239
Alignment:
Q  15 tgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgcatt 83  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23775171 tgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgcatt 23775239  T

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Target: chr1; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 15 - 82
Target Start/End: Original strand, 43467541 - 43467608
Alignment:
Q  15 tgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgcat 82  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  43467541 tgtagtccaacggttaggataattgccttccaagcaatagacctgggttcgactcccggcaaacgcat 43467608  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 15 - 79
Target Start/End: Original strand, 43466646 - 43466710
Alignment:
Q  15 tgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacg 79  Q
    |||||||||| ||||||||||||||||||| ||||| ||||||| ||||||| | ||| ||||||    
T  43466646 tgtagtccaatggttaggataattgccttctaagcattagacccaggttcgatttccgacaaacg 43466710  T

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Target: scaffold0350 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold0350
Description:

Target: scaffold0350; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 15 - 84
Target Start/End: Complemental strand, 17007 - 16938
Alignment:
Q  15 tgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgcattc 84  Q
    ||||||||||| ||| | ||||||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  17007 tgtagtccaacagttggaataattgccttccaagcaatagacctgggttagactcccggcaaacgcattc 16938  T

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Target: scaffold0016 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 71
Target Start/End: Complemental strand, 38554 - 38511
Alignment:
Q  28 ttaggataattgccttccaagcaatagacccgggttcgactccc 71  Q
    |||||| |||||||||||||||||||||||||||||| ||||||    
T  38554 ttaggacaattgccttccaagcaatagacccgggttcaactccc 38511  T

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