View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11835_low_122 (Length: 229)
Name: NF11835_low_122
Description: NF11835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11835_low_122 |
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Alignment Details
Target: chr4 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 22 - 227
Target Start/End: Complemental strand, 40748373 - 40748167
Alignment:
| Q |
22 |
atgtatgtctttagtgtaagacgaaatagattcatctcttttcatattgttgaaatcaaatgagtccaagcatcattctgaatttagatattttgatgat |
121 |
Q |
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| T |
40748373 |
atgtatgtctctcgtgtaagacgaaatagattcatctattttcatattgttgaaaccaaatgggtccaagcatcattctgaatttagatattttgatgac |
40748274 |
T |
|
| Q |
122 |
atcaatataaggaacaatttat-ctctaacattttgagtataaacataacataacaatgtctagtgattcacggtatgcgtgcgaactcaagtgaagcac |
220 |
Q |
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| T |
40748273 |
atcaatataaggaacaatttatcctctaacattttgagtataaacataacataacaatgtccagtgattcacggtatgcgtgcgaactcaagtgaagcac |
40748174 |
T |
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| Q |
221 |
ataagtg |
227 |
Q |
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||||||| |
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| T |
40748173 |
ataagtg |
40748167 |
T |
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