View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11835_low_128 (Length: 224)
Name: NF11835_low_128
Description: NF11835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11835_low_128 |
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Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 18 - 212
Target Start/End: Original strand, 42784206 - 42784400
Alignment:
| Q |
18 |
gttctaatattgtatatccaagttgtagtatgaacaagattctgatctttcaggtatgcaacggattatggcatgtttcgcttctgcatagctgacactg |
117 |
Q |
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| T |
42784206 |
gttctaatattgtatatccaagttgtagtatgaacaagattctgatctttcaggtatgcaacggattatggcatgtttcgcttctgcatagctgacactg |
42784305 |
T |
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| Q |
118 |
aacatgattggcgagaaggatctgaacagtacaaattcatcgagcattgtcttgcaacagtagacagacaaaaacaaccctggttgatctctgct |
212 |
Q |
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| T |
42784306 |
aacatgattggcgagaaggatctgaacagtacaaattcatcgagcattgtcttgcaacagtggacagacaaaaacaaccctggttgatctttgct |
42784400 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 84; Significance: 5e-40; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 68 - 207
Target Start/End: Original strand, 33860440 - 33860579
Alignment:
| Q |
68 |
caggtatgcaacggattatggcatgtttcgcttctgcatagctgacactgaacatgattggcgagaaggatctgaacagtacaaattcatcgagcattgt |
167 |
Q |
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| T |
33860440 |
caggtatgcaacagattatggcatgtttcgtttctgtatagctgacagtgagcatgattggagagaaggatcggaacaatacaaattcatcgagcattgc |
33860539 |
T |
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| Q |
168 |
cttgcaacagtagacagacaaaaacaaccctggttgatct |
207 |
Q |
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| T |
33860540 |
cttgcaacagtagatagaaaacaacaaccatggttaatct |
33860579 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 68 - 207
Target Start/End: Original strand, 33870727 - 33870866
Alignment:
| Q |
68 |
caggtatgcaacggattatggcatgtttcgcttctgcatagctgacactgaacatgattggcgagaaggatctgaacagtacaaattcatcgagcattgt |
167 |
Q |
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| T |
33870727 |
caggtatgccacagattatggcatgtttcgtttctgtatagcagacactgaacatgactggagagaaggatcggaacaatacaaattcatcgagcattgc |
33870826 |
T |
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| Q |
168 |
cttgcaacagtagacagacaaaaacaaccctggttgatct |
207 |
Q |
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| T |
33870827 |
cttgcaacagtagatagaaaacaacaaccatggttaatct |
33870866 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 68 - 202
Target Start/End: Original strand, 33875318 - 33875452
Alignment:
| Q |
68 |
caggtatgcaacggattatggcatgtttcgcttctgcatagctgacactgaacatgattggcgagaaggatctgaacagtacaaattcatcgagcattgt |
167 |
Q |
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| T |
33875318 |
caggtatgcaacagattatggcatgtttcatttctgtatagcagacagtgagcatgactggagagaaggatcggaacagtacaaattcatcgagcattac |
33875417 |
T |
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| Q |
168 |
cttgcaacagtagacagacaaaaacaaccctggtt |
202 |
Q |
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| T |
33875418 |
cttgcaactgtagatagaaaacaacaaccatggtt |
33875452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 84 - 167
Target Start/End: Complemental strand, 20003693 - 20003610
Alignment:
| Q |
84 |
tatggcatgtttcgcttctgcatagctgacactgaacatgattggcgagaaggatctgaacagtacaaattcatcgagcattgt |
167 |
Q |
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| T |
20003693 |
tatggcatgttccgtttctgtgtcgcagacactgaacatgattggagagaaggaacagaacaatacaagttcattgagcattgt |
20003610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 205
Target Start/End: Original strand, 26411480 - 26411586
Alignment:
| Q |
99 |
ttctgcatagctgacactgaacatgattggcgagaaggatctgaacagtacaaattcatcgagcattgtcttgcaacagtagacagacaaaaacaaccct |
198 |
Q |
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| T |
26411480 |
ttctgcatagctcacacagaacttgattggagaaaaggaacagaacagtacgagttcatcgaaaagtgcctagcatccgttgacagacaaaaacagccat |
26411579 |
T |
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| Q |
199 |
ggttgat |
205 |
Q |
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| T |
26411580 |
ggttgat |
26411586 |
T |
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