View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11835_low_14 (Length: 545)
Name: NF11835_low_14
Description: NF11835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11835_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 269; Significance: 1e-150; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 14 - 301
Target Start/End: Original strand, 21644997 - 21645287
Alignment:
| Q |
14 |
gagcagagaactaaaatccatgcaaaaattcaagtgtatataattagatgcttatctgttgaaacatcagcctactgcttcatggtcagtttcttggcta |
113 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
21644997 |
gagcaaagaactaaaatccatgcaaaaattcaagtgtatataattagatgcttatctgttgaaatatcagcctactgcttcatggtcagtttcttggcta |
21645096 |
T |
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| Q |
114 |
tacttgtgtgtgttattattaaagattaaagataggaaaaaacaaatcttaactattaattt---attttgtaatccttatcaaaataatcttaactatt |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
21645097 |
tacttgtgtgtgttattattaaagattaaagataggaaaaaacaaatcttaactattaatttcagattttgtaatccttatcaaaataatcttaactatt |
21645196 |
T |
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| Q |
211 |
attaatagtaaatctacttcagtatctatcactattatcactattataaactaaaatgtgaaaacgtgttcgcctatggttcaaaaacttg |
301 |
Q |
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| T |
21645197 |
attaatagtaaatctacttcagtatctatcactattatcactattataaactaaaatgtgaaaacgtgttcgcctatggttcaaaaacttg |
21645287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 14 - 301
Target Start/End: Original strand, 21623283 - 21623564
Alignment:
| Q |
14 |
gagcagagaactaaaatccatgcaaaaattcaagtgtatataattagatgcttatctgttgaaacatcagcctactgcttcatggtcagtttcttggcta |
113 |
Q |
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| T |
21623283 |
gagcaaagaactaaaatccatgcaaaaattcaagtgtatataattagatgcttatctgttgaaacatcagcctactgcttcatggtcagtttcttggcta |
21623382 |
T |
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| Q |
114 |
tacttgtgtgtgttattattaaagattaaagataggaaaaaacaaatcttaactattaattt---attttgtaatccttatcaaaataatcttaactatt |
210 |
Q |
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| T |
21623383 |
tacttgtgtgtgttattattaaagattaaagataggaaaaaacaaatcttaactattaatttcagattttgtaatccttatcaaaataatcttaactatt |
21623482 |
T |
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| Q |
211 |
attaatagtaaatctacttcagtatctatcactattatcactattataaactaaaatgtgaaaacgtgttcgcctatggttcaaaaacttg |
301 |
Q |
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| T |
21623483 |
attcatagtaaatctacttccgtatc---------tatcactattataaactaaaatgtgaaaacttgttcgcctatggttcaaaaacttg |
21623564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 387 - 528
Target Start/End: Original strand, 21623646 - 21623787
Alignment:
| Q |
387 |
tttaaaccccatataaaagaagtgcatcaagaaatttaataagaatgtaaaccataataccctgtaatatgtttaatttgatattctccttgatttggtg |
486 |
Q |
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| T |
21623646 |
tttaaaccccatataaaagaagtgcatcaagaaattcaataagaatgtaaaccataataccctgtaatatgtttaatttgatattctccttgatttggtg |
21623745 |
T |
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| Q |
487 |
ttggaaccaatgaagggattattgaaaatttgaaataaatat |
528 |
Q |
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| T |
21623746 |
ttggaaccaatgaagggattattgaaaatttgaaataaatat |
21623787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 387 - 528
Target Start/End: Original strand, 21645369 - 21645510
Alignment:
| Q |
387 |
tttaaaccccatataaaagaagtgcatcaagaaatttaataagaatgtaaaccataataccctgtaatatgtttaatttgatattctccttgatttggtg |
486 |
Q |
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| T |
21645369 |
tttaaaccccatataaaagaagtgcatcaagaaattcaataagaatgtaaaccataataccctgtaatatgtttaatttgatattctccttgatttggtg |
21645468 |
T |
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| Q |
487 |
ttggaaccaatgaagggattattgaaaatttgaaataaatat |
528 |
Q |
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| T |
21645469 |
ttggaaccaatgaagggattattgaaaatttgaaataaatat |
21645510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 387 - 528
Target Start/End: Original strand, 21597499 - 21597641
Alignment:
| Q |
387 |
tttaaaccccatataaaagaagtgcat--caagaaatttaataagaatgtaaaccataataccctgtaatatgtttaatttgatattctccttgatttgg |
484 |
Q |
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|||||||||||| |||||||||||||| |||||| || ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |
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| T |
21597499 |
tttaaaccccatttaaaagaagtgcatatcaagaagttcaataagaatgtaaaccacaataca-tgtaatatgtttaatttgatattctccttgatttgg |
21597597 |
T |
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| Q |
485 |
tgttggaaccaatgaagggattattgaaaatttgaaataaatat |
528 |
Q |
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| T |
21597598 |
tgttggaaccaatgaagggattattgaaaatttgaaataaatat |
21597641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 207 - 301
Target Start/End: Original strand, 21597322 - 21597416
Alignment:
| Q |
207 |
tattattaatagtaaatctacttcagtatctatcactattatcactattataaactaaaatgtgaaaacgtgttcgcctatggttcaaaaacttg |
301 |
Q |
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||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
21597322 |
tattaataatagtaaatctacttcggtatctatcactattatcactattataaactaaaacgtgaaaacgtgttcgcctatggttcaaaaacttg |
21597416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 138 - 210
Target Start/End: Original strand, 21597043 - 21597117
Alignment:
| Q |
138 |
attaaagataggaaaaaacaaatcttaactattaattt---attttgtaatccttatcaaaataatcttaactatt |
210 |
Q |
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|||||||||| ||||||| ||||||||||||||||||| ||| |||||||||||||| |||||||||||||||| |
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| T |
21597043 |
attaaagatatgaaaaaa-aaatcttaactattaatttcagattctgtaatccttatcataataatcttaactatt |
21597117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 390 - 428
Target Start/End: Original strand, 22767678 - 22767716
Alignment:
| Q |
390 |
aaaccccatataaaagaagtgcatcaagaaatttaataa |
428 |
Q |
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||||||||||| ||||||||||||||||||||| ||||| |
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| T |
22767678 |
aaaccccatatgaaagaagtgcatcaagaaattgaataa |
22767716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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