View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11835_low_15 (Length: 538)
Name: NF11835_low_15
Description: NF11835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11835_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 467; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 18 - 521
Target Start/End: Complemental strand, 36790545 - 36790038
Alignment:
| Q |
18 |
cacagaatggcttaaaa----acatgtataataatacataagacatatgaatttaatcaagaccaaaatcagagagttcctcaatataattgacactcat |
113 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36790545 |
cacagaatggcttaaaataaaacatgtataataatacataagacatatgaatttaatcaagaccaaaatcagagagttcctcaatataattgacactcat |
36790446 |
T |
|
| Q |
114 |
tccttgaataattatgtaccgtatttccttccttacaagttaccaccatatcctcattttatgatttggttgttttagtttgttggtattggagttaggc |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36790445 |
tccttgaataattatgtaccgtatttccttccttacaagttaccaccatagcctcattttatgatttggttgttttagtttgttggtattggagttaggc |
36790346 |
T |
|
| Q |
214 |
tataatgtctgaaactatatggcttcaacgcattgagaagctgagaaaaacagcatctaggagcttgtctcagttcatacaaggcttttggaagcgacaa |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36790345 |
tataatgtctgaaactatatggcttcaacgcattgagaagctgagaaaaacagcatctaggagcttgtctcagttcatacaaggcttttggaagcgacaa |
36790246 |
T |
|
| Q |
314 |
acatgtcagagttaggagagtgaaaactaacaaggggtttataaacttgcacttctcgatcgtgctcgacaaagacaatatcatgtgacaccacaaacat |
413 |
Q |
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|||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36790245 |
acatgtcagagttaggagggtgaaaaccaacaaggggtttataaacttgcacttttcgatcgtgctcgacaaagacaatatcatgtgacaccacaaacat |
36790146 |
T |
|
| Q |
414 |
acttggcaaaacaaaagctgtttttctttgtaagtgaaaactaaaatttataacactcacacattttacgtgctaaccacttgggcttcaatcgtttttc |
513 |
Q |
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| T |
36790145 |
acttggcaaaacaaatgctgtttttctttgtaagtgaaaactaaaatttataacactcacacattttacgtgctaaccacttgggcttcaatcgtttttt |
36790046 |
T |
|
| Q |
514 |
tctctctt |
521 |
Q |
| |
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|||||||| |
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| T |
36790045 |
tctctctt |
36790038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 4e-27; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 96 - 223
Target Start/End: Complemental strand, 27094514 - 27094392
Alignment:
| Q |
96 |
aatataattgacactcattccttgaataattatgtaccgtatttccttccttacaagttaccaccatatcctcattttatgatttggttgttttagtttg |
195 |
Q |
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||||||||||||||||||||||||||| ||| ||||| ||| |||||||||||||||||||||| ||||||| | |||||| |||||||||| ||| |
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| T |
27094514 |
aatataattgacactcattccttgaatcattgtgtacaatat----ttccttacaagttaccaccatagcctcattatgtgattttgttgttttag-ttg |
27094420 |
T |
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| Q |
196 |
ttggtattggagttaggctataatgtct |
223 |
Q |
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|| ||||||||||||||||| ||||||| |
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| T |
27094419 |
ttagtattggagttaggctacaatgtct |
27094392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 96 - 223
Target Start/End: Complemental strand, 13805960 - 13805838
Alignment:
| Q |
96 |
aatataattgacactcattccttgaataattatgtaccgtatttccttccttacaagttaccaccatatcctcattttatgatttggttgttttagtttg |
195 |
Q |
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||||||||||||||||||||||||||| ||| ||||| ||| |||||||||||||||||||||| ||||||| | ||||| |||||||||| ||| |
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| T |
13805960 |
aatataattgacactcattccttgaatcattgtgtacaatat----ttccttacaagttaccaccatagcctcattatgcgattttgttgttttag-ttg |
13805866 |
T |
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| Q |
196 |
ttggtattggagttaggctataatgtct |
223 |
Q |
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|| ||||| ||||||||||||||||||| |
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| T |
13805865 |
ttagtatttgagttaggctataatgtct |
13805838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 330 - 394
Target Start/End: Complemental strand, 27094380 - 27094316
Alignment:
| Q |
330 |
agagtgaaaactaacaaggggtttataaacttgcacttctcgatcgtgctcgacaaagacaatat |
394 |
Q |
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||||||||||||||||||||||||||||||||||||||||| | |||||| |||||||||||||| |
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| T |
27094380 |
agagtgaaaactaacaaggggtttataaacttgcacttctcaaacgtgcttgacaaagacaatat |
27094316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 330 - 370
Target Start/End: Complemental strand, 13805826 - 13805786
Alignment:
| Q |
330 |
agagtgaaaactaacaaggggtttataaacttgcacttctc |
370 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
13805826 |
agagtgaaaactaacaaggggtttataaacttgcacttctc |
13805786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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