View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11835_low_16 (Length: 536)

Name: NF11835_low_16
Description: NF11835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11835_low_16
NF11835_low_16
[»] chr1 (4 HSPs)
chr1 (329-532)||(39620933-39621138)
chr1 (83-176)||(30971190-30971283)
chr1 (181-264)||(39621203-39621283)
chr1 (6-68)||(39621289-39621351)
[»] chr3 (2 HSPs)
chr3 (83-176)||(48974268-48974361)
chr3 (87-169)||(48893857-48893939)
[»] chr8 (2 HSPs)
chr8 (80-169)||(22358353-22358442)
chr8 (83-169)||(31217077-31217164)
[»] chr2 (2 HSPs)
chr2 (86-167)||(31774152-31774233)
chr2 (87-150)||(38233314-38233378)
[»] chr7 (1 HSPs)
chr7 (83-138)||(48497527-48497582)


Alignment Details
Target: chr1 (Bit Score: 136; Significance: 1e-70; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 329 - 532
Target Start/End: Complemental strand, 39621138 - 39620933
Alignment:
Q  329 gttacctcttcatttgaaaacagatcttgttcatctgccaaaacaagtgagttattaaattatatgatcattaattattcagaaaatgatagtgatgcat 428  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  39621138 gttacctcatcatttgaaaacagatcttgttcatctgccaaaacaagtgagttattaaattacatgatcattaattattcagaaaatgatagtgatgcat 39621039  T
Q  429 tgcattatttagttttctttaccc--nnnnnnnnnnnnnttatgcatgcaatattatagtttgtcctcattaatgaggaatattagatatgagatgctaa 526  Q
    ||||||||||||||||||||||||                |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||    
T  39621038 tgcattatttagttttctttacccaaaaaaaaaaaaaaactatgcatgcaatattatagtttgtcctcattaatgaagaatattagatatgagatgttaa 39620939  T
Q  527 atgatg 532  Q
    ||||||    
T  39620938 atgatg 39620933  T

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Target: chr1; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 83 - 176
Target Start/End: Complemental strand, 30971283 - 30971190
Alignment:
Q  83 aagccaaaatgatataatataaccacaaagcaatcaataaagcataagatgtgccttagagattaccaaaagtatataaagagaacataaaaca 176  Q
    |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  30971283 aagccaaaataatataatataaccacaaagcaatcaataaagcacaagatgtgccttagagattaccaaaagtatacaaagagaacataaaaca 30971190  T

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Target: chr1; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 181 - 264
Target Start/End: Complemental strand, 39621283 - 39621203
Alignment:
Q  181 acattggaagctgaaattatatagcagtaactctactgtaaaccccaatatggtgtgacagagtacttaatcaattagtaaagc 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||    
T  39621283 acattggaagctgaaattatatagcagtaactctactgtaaacccc---atggtgtgacagagtacttaatcaattagtaaagc 39621203  T

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Target: chr1; HSP #4
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 6 - 68
Target Start/End: Complemental strand, 39621351 - 39621289
Alignment:
Q  6 atatcatccatgcaagaatttcacccttgacacatcttgcaatgacgaattacttgatgtttg 68  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39621351 atattatccatgcaagaatttcacccttgacacatcttgcaatgacgaattacttgatgtttg 39621289  T

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Target: chr3 (Bit Score: 74; Significance: 1e-33; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 83 - 176
Target Start/End: Original strand, 48974268 - 48974361
Alignment:
Q  83 aagccaaaatgatataatataaccacaaagcaatcaataaagcataagatgtgccttagagattaccaaaagtatataaagagaacataaaaca 176  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| || |||||||||| ||||||    
T  48974268 aagccaaaatgatataatataaccacaaagcaatcaataaagcacaagatgtgccttagagattatcaaaagtgtacaaagagaacagaaaaca 48974361  T

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Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 87 - 169
Target Start/End: Original strand, 48893857 - 48893939
Alignment:
Q  87 caaaatgatataatataaccacaaagcaatcaataaagcataagatgtgccttagagattaccaaaagtatataaagagaaca 169  Q
    |||||||||||| || || ||||||||||||||||||||| |||||||| |||||||| ||||||||||||| ||||||||||    
T  48893857 caaaatgatatattaaaatcacaaagcaatcaataaagcaaaagatgtgacttagagactaccaaaagtatacaaagagaaca 48893939  T

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Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 80 - 169
Target Start/End: Original strand, 22358353 - 22358442
Alignment:
Q  80 aataagccaaaatgatataatataaccacaaagcaatcaataaagcataagatgtgccttagagattaccaaaagtatataaagagaaca 169  Q
    |||||| |||||||| ||| || |||||||||||| ||||||||||| ||||||| ||||||||| ||||||||||||| ||||| ||||    
T  22358353 aataagtcaaaatgaaatattaaaaccacaaagcagtcaataaagcacaagatgtaccttagagactaccaaaagtatacaaagaaaaca 22358442  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 83 - 169
Target Start/End: Complemental strand, 31217164 - 31217077
Alignment:
Q  83 aagccaaaatgatataatataa-ccacaaagcaatcaataaagcataagatgtgccttagagattaccaaaagtatataaagagaaca 169  Q
    |||||||||||||||| ||||| |||||||||| |||| |||||| ||| ||||||||||||| ||||||||||| | ||||| ||||    
T  31217164 aagccaaaatgatatattataaaccacaaagcagtcaacaaagcacaaggtgtgccttagagactaccaaaagtacacaaagataaca 31217077  T

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Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 86 - 167
Target Start/End: Original strand, 31774152 - 31774233
Alignment:
Q  86 ccaaaatgatataatataaccacaaagcaatcaataaagcataagatgtgccttagagattaccaaaagtatataaagagaa 167  Q
    ||||||||||||| ||||||||||||||| ||||||||||| || |||||||||||  | ||||||||||||| ||||||||    
T  31774152 ccaaaatgatatattataaccacaaagcagtcaataaagcacaaaatgtgccttagctactaccaaaagtatacaaagagaa 31774233  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 87 - 150
Target Start/End: Complemental strand, 38233378 - 38233314
Alignment:
Q  87 caaaatgatataatataaccacaaagcaatcaataaa-gcataagatgtgccttagagattacca 150  Q
    |||||||| ||| |||||||| |||||| |||||||| ||| ||||||||||||||||| |||||    
T  38233378 caaaatgaaatattataaccataaagcagtcaataaaagcacaagatgtgccttagagactacca 38233314  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 83 - 138
Target Start/End: Original strand, 48497527 - 48497582
Alignment:
Q  83 aagccaaaatgatataatataaccacaaagcaatcaataaagcataagatgtgcct 138  Q
    |||||||||| | ||| ||||||||||||||| ||||||||||| |||||||||||    
T  48497527 aagccaaaataaaatattataaccacaaagcagtcaataaagcacaagatgtgcct 48497582  T

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