View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11835_low_18 (Length: 509)
Name: NF11835_low_18
Description: NF11835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11835_low_18 |
 | |
|
| [»] scaffold0141 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-122; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 167 - 502
Target Start/End: Original strand, 37172154 - 37172486
Alignment:
| Q |
167 |
agtgtgcccaaaatcttgatctcacacaagtttttctagtaaaaccttttattttattttatg-aagaaatagtaaaaccttagatgtgtcatatgttct |
265 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| | ||||||||||||||| ||||||||| |||||||||| |
|
|
| T |
37172154 |
agtgtgcccaaaatcttgatctcacacaagtttttctagtaaaaccttttttttttttttttttaagaaatagtaaaacgttagatgtgccatatgttct |
37172253 |
T |
|
| Q |
266 |
tacaaatttaaactatcacatcacaatgaacaatcacacaattgagatagacacaaaatatttatcaaaaatattaatgttttagtataagttatctcac |
365 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
37172254 |
tacaaatttaaactaccacatcaaaatgaacaatcacacaattgagatagacacaaaatatttatcgaaaatattaatattttagtataagttatctcac |
37172353 |
T |
|
| Q |
366 |
ttatatatttttcatcatccacttnnnnnnnnnttaacacaatcgtttttcagttgtgtcgaggtccacttatggaaacgcacaacccacaacactagag |
465 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |||||||||| | | |||||||||||||||| |
|
|
| T |
37172354 |
ttatatatttttcatcatccactt-aaaaaaaattaacacaaccgtttttcagttgtgtcgaggtctacttatggaa---ctccacccacaacactagag |
37172449 |
T |
|
| Q |
466 |
ttgcttatttactaaaatattgagttggcctttgctt |
502 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| |
|
|
| T |
37172450 |
ttgcttatttactaaaatattgagttggccttagctt |
37172486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 28 - 126
Target Start/End: Original strand, 37172028 - 37172126
Alignment:
| Q |
28 |
agggaaaatatttgagtggtcgcacgatgttggctacaagatttgaatagacaaataatacaacatatcatctaattatttaaaaatactcattattaa |
126 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37172028 |
agggaaaatatttgagtggtcgcacgatattggctacgagatttgaatagacaaataatacaacatatcatctaattatttaaaaatactcattattaa |
37172126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0141 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0141
Description:
Target: scaffold0141; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 399 - 502
Target Start/End: Complemental strand, 2576 - 2476
Alignment:
| Q |
399 |
ttaacacaatcgtttttcagttgtgtcgaggtccacttatggaaacgcacaacccacaacactagagttgcttatttactaaaatattgagttggccttt |
498 |
Q |
| |
|
|||||||||| ||||||| |||| ||||||||||||| ||||| | ||| || || | ||||| |||||||||||||||||| |||||||||||| |
|
|
| T |
2576 |
ttaacacaatagtttttcggttggatcgaggtccacttctggaaccccac---ccgcattagtagaggtgcttatttactaaaatactgagttggcctta |
2480 |
T |
|
| Q |
499 |
gctt |
502 |
Q |
| |
|
|||| |
|
|
| T |
2479 |
gctt |
2476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University