View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11835_low_19 (Length: 496)

Name: NF11835_low_19
Description: NF11835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11835_low_19
NF11835_low_19
[»] chr8 (2 HSPs)
chr8 (1-457)||(40506478-40506944)
chr8 (133-205)||(27157711-27157783)
[»] chr6 (5 HSPs)
chr6 (133-204)||(6978523-6978594)
chr6 (141-217)||(33240882-33240956)
chr6 (171-216)||(29389189-29389234)
chr6 (144-216)||(20207190-20207261)
chr6 (144-216)||(22101213-22101284)
[»] chr7 (6 HSPs)
chr7 (133-213)||(44453599-44453679)
chr7 (166-217)||(17115917-17115968)
chr7 (135-198)||(31459410-31459473)
chr7 (133-215)||(22713449-22713530)
chr7 (140-217)||(35356397-35356473)
chr7 (135-188)||(48392390-48392443)
[»] chr1 (3 HSPs)
chr1 (166-213)||(31767939-31767986)
chr1 (166-205)||(31578007-31578046)
chr1 (141-219)||(32556521-32556598)
[»] chr3 (3 HSPs)
chr3 (134-196)||(26665523-26665585)
chr3 (145-203)||(1750080-1750138)
chr3 (133-198)||(7925344-7925409)
[»] chr2 (3 HSPs)
chr2 (133-199)||(37267713-37267779)
chr2 (133-226)||(13019665-13019759)
chr2 (176-216)||(38308103-38308143)
[»] chr5 (6 HSPs)
chr5 (133-208)||(13271483-13271558)
chr5 (166-219)||(17223101-17223154)
chr5 (133-198)||(30632492-30632557)
chr5 (166-219)||(40491709-40491762)
chr5 (145-213)||(35323616-35323684)
chr5 (145-213)||(41149519-41149587)
[»] chr4 (2 HSPs)
chr4 (141-199)||(24083174-24083232)
chr4 (143-217)||(39791212-39791285)


Alignment Details
Target: chr8 (Bit Score: 333; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 457
Target Start/End: Original strand, 40506478 - 40506944
Alignment:
Q  1 gataaaatgaaggagtaagag------gatgtaagatgaagtgtttcatgtttatattggagggaaaatatgtagtttggataaaatgaaggagtgagag 94  Q
    |||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  40506478 gataaaatgaaggagtaagagtgtatagatgtaagatgaagtgtttcatgtttatattggagggaaaataagtagtttggataaaatgaaggagtgagag 40506577  T
Q  95 gatgatatgtaagaacacgaggcaaaatttttggttatctttttccatcctatgagtttctcgtatgtccaatttggattgtaaaatccgaaatatttca 194  Q
    ||| | |||||||||||||||| |||| ||||||| |||||||| |||||||||||||||||||||| || |||||||||||||||||||||||||||||    
T  40506578 gat-agatgtaagaacacgaggtaaaaattttggtcatcttttttcatcctatgagtttctcgtatgccctatttggattgtaaaatccgaaatatttca 40506676  T
Q  195 acgtgattttgaaagtttttatg-agtgtttatatca----gagtctataat-ggaaccttataaggcgtgtgagaaacttatatgatgggaaaagaagc 288  Q
    ||||||||||| | ||||||||| |||||||||||||    ||||| ||||| |||||| ||||||||| |||||||||||||||| |||||||||||||    
T  40506677 acgtgattttggaggtttttatggagtgtttatatcattcagagtccataatcggaaccgtataaggcgcgtgagaaacttatatggtgggaaaagaagc 40506776  T
Q  289 tgtcaaaatttctggggattaaattcgggcccaagagagtgttttaatttctattagcccctcccttttactcaaacgagagaaactgtaacctaaatta 388  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  40506777 tgtcaaaatttctggggattaaatt-gggcccaagagagtgttttaatttctattcgcccctcccttttactcaaacgagagaaactgtaacctaaatta 40506875  T
Q  389 ttcccgctcattcccgtttagaggaaaccacattttcaaaaaacaatccgcaattcttcttcttcttcc 457  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  40506876 ttcccgctcattcccgtttagaagaaaccacattttcaaaaaacaatccgcaattcttcttcttcttcc 40506944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 133 - 205
Target Start/End: Complemental strand, 27157783 - 27157711
Alignment:
Q  133 ctttttccatcctatgagtttctcgtatgtccaatttggattgtaaaatccgaaatatttcaacgtgattttg 205  Q
    ||||||||| ||||||||||||||||  || | ||| ||||| ||||||||||| |||||||||||| |||||    
T  27157783 ctttttccaccctatgagtttctcgtgcgtgctattcggattctaaaatccgaattatttcaacgtggttttg 27157711  T

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Target: chr6 (Bit Score: 44; Significance: 8e-16; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 133 - 204
Target Start/End: Complemental strand, 6978594 - 6978523
Alignment:
Q  133 ctttttccatcctatgagtttctcgtatgtccaatttggattgtaaaatccgaaatatttcaacgtgatttt 204  Q
    ||||||||||||||||||||||||||  |||| ||||||||| |||||||  |||||||||||||| |||||    
T  6978594 ctttttccatcctatgagtttctcgtgcgtcctatttggattctaaaatctaaaatatttcaacgtaatttt 6978523  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 141 - 217
Target Start/End: Complemental strand, 33240956 - 33240882
Alignment:
Q  141 atcctatgagtttctcgtatgtccaatttggattgtaaaatccgaaatatttcaacgtgattttgaaagtttttatg 217  Q
    ||||||||||||||||||  | || ||| ||||| |||||||||||||||||||||||  ||||||| |||||||||    
T  33240956 atcctatgagtttctcgtgcgccctattcggattctaaaatccgaaatatttcaacgt--ttttgaaggtttttatg 33240882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 171 - 216
Target Start/End: Complemental strand, 29389234 - 29389189
Alignment:
Q  171 gattgtaaaatccgaaatatttcaacgtgattttgaaagtttttat 216  Q
    |||| ||||||||||||| |||||||||| ||||||| ||||||||    
T  29389234 gattttaaaatccgaaatgtttcaacgtgtttttgaaggtttttat 29389189  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 144 - 216
Target Start/End: Complemental strand, 20207261 - 20207190
Alignment:
Q  144 ctatgagtttctcgtatgtccaatttggattgtaaaatccgaaatatttcaacgtgattttgaaagtttttat 216  Q
    |||||| | ||||| |||||| |||  |||| ||||||| |||||||||||||||| ||||| ||||||||||    
T  20207261 ctatgaatatctcgcatgtcctattcagattctaaaatctgaaatatttcaacgtgtttttg-aagtttttat 20207190  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 144 - 216
Target Start/End: Complemental strand, 22101284 - 22101213
Alignment:
Q  144 ctatgagtttctcgtatgtccaatttggattgtaaaatccgaaatatttcaacgtgattttgaaagtttttat 216  Q
    |||||| | ||||| |||||| |||  |||| ||||||| |||||||||||||||| ||||| ||||||||||    
T  22101284 ctatgaatatctcgcatgtcctattcagattctaaaatctgaaatatttcaacgtgtttttg-aagtttttat 22101213  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 133 - 213
Target Start/End: Original strand, 44453599 - 44453679
Alignment:
Q  133 ctttttccatcctatgagtttctcgtatgtccaatttggattgtaaaatccgaaatatttcaacgtgattttgaaagtttt 213  Q
    |||||| || ||||| ||||||||||| |||| ||| ||||| |||||| ||||||||||||||||| ||||| |||||||    
T  44453599 cttttttcaccctataagtttctcgtacgtcctattcggattctaaaattcgaaatatttcaacgtgtttttggaagtttt 44453679  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 166 - 217
Target Start/End: Original strand, 17115917 - 17115968
Alignment:
Q  166 atttggattgtaaaatccgaaatatttcaacgtgattttgaaagtttttatg 217  Q
    ||||||||| |||||||  ||||||||||||||| |||||||||||||||||    
T  17115917 atttggattttaaaatctaaaatatttcaacgtgtttttgaaagtttttatg 17115968  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 135 - 198
Target Start/End: Original strand, 31459410 - 31459473
Alignment:
Q  135 ttttccatcctatgagtttctcgtatgtccaatttggattgtaaaatccgaaatatttcaacgt 198  Q
    ||||||| ||||| |||||||||| ||||| |||   ||| |||||||||||||||||||||||    
T  31459410 ttttccaccctataagtttctcgtgtgtcctattcaaattttaaaatccgaaatatttcaacgt 31459473  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 133 - 215
Target Start/End: Complemental strand, 22713530 - 22713449
Alignment:
Q  133 ctttttccatcctatgagtttctcgtatgtccaatttggattgtaaaatccgaaatatttcaacgtgattttgaaagttttta 215  Q
    ||||||||| | ||||||||||||||  | || ||||| ||| ||||||| |||||||||||||||| ||||| | |||||||    
T  22713530 ctttttccaccttatgagtttctcgtgcg-cctatttgaattttaaaatctgaaatatttcaacgtgtttttggaggttttta 22713449  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 140 - 217
Target Start/End: Complemental strand, 35356473 - 35356397
Alignment:
Q  140 catcctatgagtttctcgtatgtccaatttggattgtaaaatccgaaatatttcaacgtgattttgaaagtttttatg 217  Q
    |||||| ||||||||||||  |||| ||||| ||| ||||||||||||| ||| |||||| ||||| | |||||||||    
T  35356473 catcctttgagtttctcgtgcgtcctatttgaattctaaaatccgaaatgttttaacgtg-ttttggaggtttttatg 35356397  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 188
Target Start/End: Original strand, 48392390 - 48392443
Alignment:
Q  135 ttttccatcctatgagtttctcgtatgtccaatttggattgtaaaatccgaaat 188  Q
    |||| ||| ||||||||||||||| ||||  ||||||||| |||||||||||||    
T  48392390 tttttcattctatgagtttctcgtgtgtcatatttggattttaaaatccgaaat 48392443  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 166 - 213
Target Start/End: Complemental strand, 31767986 - 31767939
Alignment:
Q  166 atttggattgtaaaatccgaaatatttcaacgtgattttgaaagtttt 213  Q
    ||||||||| |||||||||||||||||||||||| |||||||||||||    
T  31767986 atttggattttaaaatccgaaatatttcaacgtgtttttgaaagtttt 31767939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 166 - 205
Target Start/End: Complemental strand, 31578046 - 31578007
Alignment:
Q  166 atttggattgtaaaatccgaaatatttcaacgtgattttg 205  Q
    ||||||||| |||||||||||||||||||||||| |||||    
T  31578046 atttggattctaaaatccgaaatatttcaacgtgtttttg 31578007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 141 - 219
Target Start/End: Complemental strand, 32556598 - 32556521
Alignment:
Q  141 atcctatgagtttctcgtatgtccaatttggattgtaaaatccgaaatatttcaacgtgattttgaaagtttttatgag 219  Q
    ||||||||||||||||| | |||| ||| ||||| ||||||| ||||||||  ||||| |||||| | |||||||||||    
T  32556598 atcctatgagtttctcgcacgtcctattcggattttaaaatctgaaatattgtaacgt-attttggaggtttttatgag 32556521  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 134 - 196
Target Start/End: Complemental strand, 26665585 - 26665523
Alignment:
Q  134 tttttccatcctatgagtttctcgtatgtccaatttggattgtaaaatccgaaatatttcaac 196  Q
    |||| |||||||||||||||||||   |||| ||||||||| |||||||||||||||||||||    
T  26665585 ttttcccatcctatgagtttctcgcgcgtcctatttggattttaaaatccgaaatatttcaac 26665523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 145 - 203
Target Start/End: Original strand, 1750080 - 1750138
Alignment:
Q  145 tatgagtttctcgtatgtccaatttggattgtaaaatccgaaatatttcaacgtgattt 203  Q
    ||||||||||||||  |||| ||||||||| |||||||  |||| ||||||||||||||    
T  1750080 tatgagtttctcgtgcgtcctatttggattctaaaatctaaaatgtttcaacgtgattt 1750138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 133 - 198
Target Start/End: Original strand, 7925344 - 7925409
Alignment:
Q  133 ctttttccatcctatgagtttctcgtatgtccaatttggattgtaaaatccgaaatatttcaacgt 198  Q
    ||||||||| ||||||| ||||||   ||||| |||| |||| ||||||| |||||||||||||||    
T  7925344 ctttttccaccctatgaatttctcacgtgtcctatttagattctaaaatctgaaatatttcaacgt 7925409  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 133 - 199
Target Start/End: Original strand, 37267713 - 37267779
Alignment:
Q  133 ctttttccatcctatgagtttctcgtatgtccaatttggattgtaaaatccgaaatatttcaacgtg 199  Q
    ||||||||| | |||||| ||||||| || || ||||||||| ||||||||||||||||| ||||||    
T  37267713 ctttttccaccttatgagcttctcgtgtgccctatttggattctaaaatccgaaatattttaacgtg 37267779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 133 - 226
Target Start/End: Complemental strand, 13019759 - 13019665
Alignment:
Q  133 ctttttccatcctatgagtttctcgtatgtccaatttggattgtaaaatccgaaatatttcaacgtgattttgaaagtttttat-gagtgtttat 226  Q
    ||||||||| |||||||||||||||  |||||  || |||||  |||||| ||||  |||||| |||||||||||  ||||||| ||||||||||    
T  13019759 ctttttccaccctatgagtttctcgcgtgtccttttcggatttgaaaatctgaaacgtttcaatgtgattttgaagatttttatggagtgtttat 13019665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 176 - 216
Target Start/End: Complemental strand, 38308143 - 38308103
Alignment:
Q  176 taaaatccgaaatatttcaacgtgattttgaaagtttttat 216  Q
    ||||||| ||||| |||||||||| ||||||||||||||||    
T  38308143 taaaatctgaaatgtttcaacgtgtttttgaaagtttttat 38308103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 133 - 208
Target Start/End: Complemental strand, 13271558 - 13271483
Alignment:
Q  133 ctttttccatcctatgagtttctcgtatgtccaatttggattgtaaaatccgaaatatttcaacgtgattttgaaa 208  Q
    ||||||||| | ||| |||||||||   |||| ||||| ||| ||||||| |||||||||||||||| ||||||||    
T  13271558 ctttttccaccatattagtttctcgcgcgtcctatttgaattctaaaatctgaaatatttcaacgtgtttttgaaa 13271483  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 166 - 219
Target Start/End: Original strand, 17223101 - 17223154
Alignment:
Q  166 atttggattgtaaaatccgaaatatttcaacgtgattttgaaagtttttatgag 219  Q
    |||| |||| ||||||| |||||||||||||||| ||||| | |||||||||||    
T  17223101 atttagattctaaaatctgaaatatttcaacgtgtttttgcaggtttttatgag 17223154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 133 - 198
Target Start/End: Original strand, 30632492 - 30632557
Alignment:
Q  133 ctttttccatcctatgagtttctcgtatgtccaatttggattgtaaaatccgaaatatttcaacgt 198  Q
    ||||||||||| | |||||||||||| || || ||| ||||| |||||||| |||||||| |||||    
T  30632492 ctttttccatcttttgagtttctcgtttgccctattcggattttaaaatccaaaatattttaacgt 30632557  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 166 - 219
Target Start/End: Original strand, 40491709 - 40491762
Alignment:
Q  166 atttggattgtaaaatccgaaatatttcaacgtgattttgaaagtttttatgag 219  Q
    ||||||||| |||||||| |||| |||||||||| ||||| | |||||||||||    
T  40491709 atttggattctaaaatccaaaatgtttcaacgtgtttttggaggtttttatgag 40491762  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 145 - 213
Target Start/End: Original strand, 35323616 - 35323684
Alignment:
Q  145 tatgagtttctcgtatgtccaatttggattgtaaaatccgaaatatttcaacgtgattttgaaagtttt 213  Q
    |||||| |||||||  |||| |||  |||| |||||||||||||||||||||||  ||||||| |||||    
T  35323616 tatgagattctcgtgcgtcctattcagattctaaaatccgaaatatttcaacgtatttttgaaggtttt 35323684  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 145 - 213
Target Start/End: Original strand, 41149519 - 41149587
Alignment:
Q  145 tatgagtttctcgtatgtccaatttggattgtaaaatccgaaatatttcaacgtgattttgaaagtttt 213  Q
    |||||| ||||||| || || ||||| ||| |||||||| | |||||||| |||| |||||||||||||    
T  41149519 tatgagcttctcgtgtgccctatttgaattctaaaatccaacatatttcatcgtgtttttgaaagtttt 41149587  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 141 - 199
Target Start/End: Original strand, 24083174 - 24083232
Alignment:
Q  141 atcctatgagtttctcgtatgtccaatttggattgtaaaatccgaaatatttcaacgtg 199  Q
    ||||| |||||||||||  || || ||||||||| ||||||||||||||||| ||||||    
T  24083174 atcctgtgagtttctcgcgtgccctatttggattctaaaatccgaaatattttaacgtg 24083232  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 143 - 217
Target Start/End: Original strand, 39791212 - 39791285
Alignment:
Q  143 cctatgagtttctcgtatgtccaatttggattgtaaaatccgaaatatttcaacgtgattttgaaagtttttatg 217  Q
    ||||| |||||||| |  |||| ||||| ||| |||||||||||||||||||||||| |||||||  ||||||||    
T  39791212 cctataagtttctcatgcgtcctatttgaattctaaaatccgaaatatttcaacgtg-ttttgaagatttttatg 39791285  T

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