View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11835_low_20 (Length: 492)
Name: NF11835_low_20
Description: NF11835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11835_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 19 - 477
Target Start/End: Complemental strand, 46262839 - 46262381
Alignment:
| Q |
19 |
attgcatatgctaaaataatttttacatgtctagccatgaaaaaatgtaacaatatttcatgctttgccacggaaatactctgataaatatggtgttgtt |
118 |
Q |
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| T |
46262839 |
attgcatatgctaaaataatttttacatgtctagccatgaaaaaatgtaacaatatttcatgctttgccacggaaatactctgataaatatggtgttgtt |
46262740 |
T |
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| Q |
119 |
tatcaaaaataattccttatcacatagaccaacttatagatctttattatgaattagtggaatttccttatatcttcgaatgaatttgatatgcaaaaga |
218 |
Q |
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| T |
46262739 |
tatcaaaaataattccttatcacatagaccaacttatagatctttattatgaattagtggaatttccttatatcttcgaatgaatttgatatgcaaaaga |
46262640 |
T |
|
| Q |
219 |
cattctttccaacaaaataacatgggtgaagattatgaaattttgtagttttcaaagtgtacnnnnnnnnnnnnnnnnnnnnnnngggtcaaagttactt |
318 |
Q |
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|||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
46262639 |
cattctttccaacataataacatggctgaagattatgaaattttgtagttttcaaagtgtactttttgttttgccttttttttttgggtcaaagttactt |
46262540 |
T |
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| Q |
319 |
ggcatgtttcagagagttttatgttcttgaatatttcacatggttgcaggaaaagttgattttgctccgaatgaagatgcacatgtcattggtgattgta |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46262539 |
ggcatgtttcagagagttttatgttcttgaatatttcacatggttgcaggaaaagttgattttgctccgaatgaagatgcacatgtcattggtgattgta |
46262440 |
T |
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| Q |
419 |
ttaaggtatcttcattatctatatagcaccaatacttttccgtgtttgtgtcgtgtcca |
477 |
Q |
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| T |
46262439 |
ttaaggtatcttcattatctatatagcaccaatacttttctgtgtttgtgtcatgtcca |
46262381 |
T |
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