View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11835_low_21 (Length: 490)
Name: NF11835_low_21
Description: NF11835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11835_low_21 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 51 - 474
Target Start/End: Complemental strand, 29564310 - 29563896
Alignment:
| Q |
51 |
ccagacaagtctttttcaaattcccatgaagaggcagtgctcgacgttgggaaataaataacagtcacnnnnnnngcacagtgtctaacgttgttgttat |
150 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
29564310 |
ccagacaagtctttttcaaattcccatgaagaggcagtgctcgacgttgggaaataaataacagtcacacaaaaagcacagtgtctaacgttgttgttat |
29564211 |
T |
|
| Q |
151 |
tattgtcatttcaaaatctctgttcttcctcttcacgaggttccacgcctagtacttagtaccgcttcttccatttattattactacatacaccttcctt |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29564210 |
tattgtcatttcaaaatctctgttcttcctcttcacgaggttgcacgcctagtacttagtaccgcttcttccatttattattactacatacaccttcctt |
29564111 |
T |
|
| Q |
251 |
cttataaacaaacactcttcgtctttgttacattgcatgagaaaatgtccacaccattatcttcaagaaaacccaaatggccccatcatccaccacctcc |
350 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29564110 |
cttataaacaaacactcttcgtctttgttacattgcatgagaaaatgtccacac---------caagaaaacccaaatggccccatcatccaccacctcc |
29564020 |
T |
|
| Q |
351 |
tccaactccaaggattctccatttccctcgtcgtcctcgccggagactcccttcctcctcaaccacccggagggaccccaacatgttagggacattgttt |
450 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29564019 |
tccaactccaaggattctccatttccctcgtcgtcctcgccggagactcccttcctcctcaaccacccggagggaccccaacatgttagggacattgttt |
29563920 |
T |
|
| Q |
451 |
gatagagagaaacgtgcacctgct |
474 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
29563919 |
gatagagagaaacgtgcacctgct |
29563896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University