View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11835_low_24 (Length: 479)
Name: NF11835_low_24
Description: NF11835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11835_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 440; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 1 - 460
Target Start/End: Original strand, 37877006 - 37877465
Alignment:
| Q |
1 |
tcatatctacacctagctagctgaaaatcctaccgtctgtcaatcactgacaaacaaatcacgatgtttaagatgaattcgatctccgcagtttccgttt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
37877006 |
tcatatctacacctagctagctgaaaatcctaccgtctgtcaatcacagacaaacaaatcacgatgtttaagatgaatttgatctccgcagtttccgttt |
37877105 |
T |
|
| Q |
101 |
tggtcttggctgctccgtaattggaatgaggaactcttggagctgccaaaagaaaacaaattgaacaataattagaggttagattcatagccaaaatatg |
200 |
Q |
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| T |
37877106 |
tggtcttggctgctccgtaattggaatgaggaactcttggagctgccaaaagaaaacaaattgaacaataattagaggttagattcatagccaaaatatg |
37877205 |
T |
|
| Q |
201 |
aaaatcttttgtatttctaaagttccattgtcatgaaatttaggtgatgaagtgatgcaaatatcacatcccaccaaagttccaaaagtatttcctaagg |
300 |
Q |
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| T |
37877206 |
aaaatcttttgtatttctaaagttccattgtcatgaaatttaggtgatgaagtgatgcaaatatcacatcccaccaaagttccaaaagtatttcctaagg |
37877305 |
T |
|
| Q |
301 |
tgtcattaaactgcagaaacacttaattaacaagtctaatttaattgaagtttaagtgagatttggattttggatattgcaaacaaaaataatgatatag |
400 |
Q |
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|||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
37877306 |
tgtcattaaacttcaaaaacacttaattaacaagtctaatttaattgaagtttaagtgagatttggattttggatattccaaacaaaaataatgatatag |
37877405 |
T |
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| Q |
401 |
aatgtgtaatactaagttctgtatattgaacaacaaaagtcatggtcattggtcatggtg |
460 |
Q |
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| T |
37877406 |
aatgtgtaatactaagttctgtatattgaacaacaaaagtcatggtcattggtcatggtg |
37877465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 440; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 1 - 460
Target Start/End: Complemental strand, 23894675 - 23894216
Alignment:
| Q |
1 |
tcatatctacacctagctagctgaaaatcctaccgtctgtcaatcactgacaaacaaatcacgatgtttaagatgaattcgatctccgcagtttccgttt |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
23894675 |
tcatatctacacctagctagctgaaaatcctaccgtctgtcaatcacagacaaacaaatcacgatgtttaagatgaatttgatctccgcagtttccgttt |
23894576 |
T |
|
| Q |
101 |
tggtcttggctgctccgtaattggaatgaggaactcttggagctgccaaaagaaaacaaattgaacaataattagaggttagattcatagccaaaatatg |
200 |
Q |
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| T |
23894575 |
tggtcttggctgctccgtaattggaatgaggaactcttggagctgccaaaagaaaacaaattgaacaataattagaggttagattcatagccaaaatatg |
23894476 |
T |
|
| Q |
201 |
aaaatcttttgtatttctaaagttccattgtcatgaaatttaggtgatgaagtgatgcaaatatcacatcccaccaaagttccaaaagtatttcctaagg |
300 |
Q |
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| T |
23894475 |
aaaatcttttgtatttctaaagttccattgtcatgaaatttaggtgatgaagtgatgcaaatatcacatcccaccaaagttccaaaagtatttcctaagg |
23894376 |
T |
|
| Q |
301 |
tgtcattaaactgcagaaacacttaattaacaagtctaatttaattgaagtttaagtgagatttggattttggatattgcaaacaaaaataatgatatag |
400 |
Q |
| |
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|||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
23894375 |
tgtcattaaacttcaaaaacacttaattaacaagtctaatttaattgaagtttaagtgagatttggattttggatattccaaacaaaaataatgatatag |
23894276 |
T |
|
| Q |
401 |
aatgtgtaatactaagttctgtatattgaacaacaaaagtcatggtcattggtcatggtg |
460 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23894275 |
aatgtgtaatactaagttctgtatattgaacaacaaaagtcatggtcattggtcatggtg |
23894216 |
T |
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