View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11835_low_25 (Length: 465)
Name: NF11835_low_25
Description: NF11835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11835_low_25 |
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Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 29 - 345
Target Start/End: Complemental strand, 27762070 - 27761773
Alignment:
| Q |
29 |
aacagcagatattattacattgaatgagtgcaagacgcatcaaaacatttgcgaaagccaaagaccaaaaacata-aaggtgttatatatatgcggcaca |
127 |
Q |
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| T |
27762070 |
aacagcagatattattacattgaatgagtgcacgacgcatcaaaacatttgcaaaagccaaagaccaaaa-catagaaggtgttatgtatatgcggcaca |
27761972 |
T |
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| Q |
128 |
tctgatacaacccaacaaaaaccaccccaactcctccaagctaaaacagcgacaaagccacacagcaagaagccaaaccaaaggaaaggagcctgatgtt |
227 |
Q |
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| T |
27761971 |
tatgatacaacccaacaaaaatcaccccaact-------------------acaaagccgcacagcaagaagccaaaccaaaggaaaggagcctgatgct |
27761891 |
T |
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| Q |
228 |
gaaggtatacgagggcgaaagtccaaaacagaagtgcaaaaccaaattgtctctaaaaatagtctacccgcgaatacatctacatcaacgccagctagga |
327 |
Q |
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| T |
27761890 |
gaaggtatacgagggcgaaagaccaaaacagaagtgcaaaaccaaattgtctctaaaaatagtctacccgcaaatacatctacatcaacaccagctagga |
27761791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 350 - 457
Target Start/End: Complemental strand, 27756841 - 27756734
Alignment:
| Q |
350 |
ttagctaccattgaaccattcagttacaagtgcactaaagattgtgtatacaagggaacaagaacgaagaaaatctgcacaactgagttctttaaatcca |
449 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27756841 |
ttagctaccattgaaccattcagttacaagtgcactaaagattgtgtatacaagggaacaagaacgaagaaaatctgcacaactgagttctttaaatcca |
27756742 |
T |
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| Q |
450 |
tctctgct |
457 |
Q |
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| T |
27756741 |
tctgtgct |
27756734 |
T |
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