View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11835_low_26 (Length: 459)
Name: NF11835_low_26
Description: NF11835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11835_low_26 |
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Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-100; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 236 - 449
Target Start/End: Complemental strand, 3924420 - 3924207
Alignment:
| Q |
236 |
gttttctccactaattcaagtgactcaaagtcttcaatccctttattcatttgtttaaacctttgctccatcatcatcaacttcaacttcaaccaattct |
335 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||| |
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| T |
3924420 |
gttttctccactaattcaaatgactcaaagtcttcaatccctttattcatttgtttgaacctttcctccatcatcatcaaattcaacttcaaccaattct |
3924321 |
T |
|
| Q |
336 |
ggcttaatctcctctaactgctgcaaaacttgtttgacttcaggcctagcagaaagtgatggatcaacacaatgcaaagctaatttcaatgtattaagaa |
435 |
Q |
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|||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3924320 |
ggcttaatctcctctaactgctgcaaaatttgtttaacttcaggcctagcagaaggtgatggatcaacacaatgcaaagctaatttcaatgtattaagaa |
3924221 |
T |
|
| Q |
436 |
gttcatctcctatg |
449 |
Q |
| |
|
|||||||||||||| |
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| T |
3924220 |
gttcatctcctatg |
3924207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 236 - 449
Target Start/End: Complemental strand, 3908404 - 3908191
Alignment:
| Q |
236 |
gttttctccactaattcaagtgactcaaagtcttcaatccctttattcatttgtttaaacctttgctccatcatcatcaacttcaacttcaaccaattct |
335 |
Q |
| |
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||||||||||||| ||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3908404 |
gttttctccactatttcaagtgactcaaagtcttccatccatttattcatttgtttgaacctttgctccatcatcatcaacttcaacttcaaccaattct |
3908305 |
T |
|
| Q |
336 |
ggcttaatctcctctaactgctgcaaaacttgtttgacttcaggcctagcagaaagtgatggatcaacacaatgcaaagctaatttcaatgtattaagaa |
435 |
Q |
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|| |||||||| ||||| ||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3908304 |
ggtttaatctcttctaattgctgcaaaacttgtttaacctcaggcctagcagaaggtgatggatcaacacaatgcaaagctaatttcaatgtattaagaa |
3908205 |
T |
|
| Q |
436 |
gttcatctcctatg |
449 |
Q |
| |
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|||||||||||||| |
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| T |
3908204 |
gttcatctcctatg |
3908191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 18 - 182
Target Start/End: Complemental strand, 3924635 - 3924471
Alignment:
| Q |
18 |
ataagcactagaggattaaaattttccctgttagaagaagccaacatgtaattgaatcaaaacaaaacaaatgcatcttagtttaaatagcaattgaaat |
117 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
3924635 |
ataagcactagaggatttaaatttcccctgttagaagaagccaacatgtaattgaatcaacccaaaacaaatgcatcttagtttaaatagcaattgaaat |
3924536 |
T |
|
| Q |
118 |
aacattcattattcatctagttcaaaagaatacttaatctctcaaaccaaatcctcacatcctat |
182 |
Q |
| |
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| T |
3924535 |
aacattcattattcatctagttcaaaaaaatacttgatgtctcaaacaaaatcctcacatcctat |
3924471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 68 - 182
Target Start/End: Complemental strand, 3908569 - 3908455
Alignment:
| Q |
68 |
attgaatcaaaacaaaacaaatgcatcttagtttaaatagcaattgaaataacattcattattcatctagttcaaaagaatacttaatctctcaaaccaa |
167 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||| ||||| ||| |
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| T |
3908569 |
attgaatcaaaccaaaacaaatgcatcttagtttaattagcaattgaaagaacattcattattcatatagttcaaaagaatacttaatctgtcaaatcaa |
3908470 |
T |
|
| Q |
168 |
atcctcacatcctat |
182 |
Q |
| |
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| ||||||||||||| |
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| T |
3908469 |
aacctcacatcctat |
3908455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 338 - 449
Target Start/End: Original strand, 4222578 - 4222689
Alignment:
| Q |
338 |
cttaatctcctctaactgctgcaaaacttgtttgacttcaggcctagcagaaagtgatggatcaacacaatgcaaagctaatttcaatgtattaagaagt |
437 |
Q |
| |
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|||| |||| ||||| | || |||||| | ||| |||| ||| ||| ||||| || | |||||||||||||| ||||| ||||||| | ||||||| | | |
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| T |
4222578 |
cttattctcttctaattactacaaaacgtatttaactttaggtctatcagaaggtaaaggatcaacacaatgtaaagccaatttcattctattaagcaat |
4222677 |
T |
|
| Q |
438 |
tcatctcctatg |
449 |
Q |
| |
|
|||||||||||| |
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|
| T |
4222678 |
tcatctcctatg |
4222689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 80 - 182
Target Start/End: Complemental strand, 26052887 - 26052784
Alignment:
| Q |
80 |
caaaacaaatgcatcttagtttaaatagcaattgaaataacattcattattcatctagttcaaaagaatactt-aatctctcaaaccaaatcctcacatc |
178 |
Q |
| |
|
||||||||| ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| | | |||||||| ||||||||||||| |
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| T |
26052887 |
caaaacaaaagcatcttagtttaaataacaattgaaaaaacattcattattcatctagttcaaaagaatacttgattgtctcaaacaaaatcctcacatc |
26052788 |
T |
|
| Q |
179 |
ctat |
182 |
Q |
| |
|
|||| |
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|
| T |
26052787 |
ctat |
26052784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 51 - 182
Target Start/End: Complemental strand, 32028422 - 32028283
Alignment:
| Q |
51 |
gaagaagccaacatgtaattgaatc--------aaaacaaaacaaatgcatcttagtttaaatagcaattgaaataacattcattattcatctagttcaa |
142 |
Q |
| |
|
||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |
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| T |
32028422 |
gaagaagccaacatgtaattgaatcgttcaatgaaaccaaaacaaa-gcatcttagtttaaataacaattgaaaaaacattcattattcatctagttcaa |
32028324 |
T |
|
| Q |
143 |
aagaatact-taatctctcaaaccaaatcctcacatcctat |
182 |
Q |
| |
|
||||||||| | | |||||||| ||||||||||||||||| |
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|
| T |
32028323 |
aagaatactcgattgtctcaaacaaaatcctcacatcctat |
32028283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 80 - 134
Target Start/End: Original strand, 13858814 - 13858868
Alignment:
| Q |
80 |
caaaacaaatgcatcttagtttaaatagcaattgaaataacattcattattcatc |
134 |
Q |
| |
|
||||||||| ||||||||||||||||| ||||| ||| ||||||||||||||||| |
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|
| T |
13858814 |
caaaacaaaagcatcttagtttaaataacaatttaaaaaacattcattattcatc |
13858868 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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