View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11835_low_28 (Length: 441)
Name: NF11835_low_28
Description: NF11835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11835_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 18 - 428
Target Start/End: Complemental strand, 31332062 - 31331652
Alignment:
| Q |
18 |
gttggatctgggaaattaggatcacatatggtcatgccacagtccataagttcaagaagtggcaattgagctgtagcaaattgaatgccacctgaaccat |
117 |
Q |
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| T |
31332062 |
gttggatctgggaaattaggatcacatatggtcatgccacagtccataagttcaagaagtggcaattgagctgtagcaaattgaatgccacctgaaacat |
31331963 |
T |
|
| Q |
118 |
gtgacagcagattaatataaacaaacataatctaataatgtgtaagtttcgtgaaataattgaggatgtaacgaaagattacttgaagtcacattagggc |
217 |
Q |
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| T |
31331962 |
gtgacagcagattaatataaacaaacataatctaataatgtgtaagtttcgtgaaataattgaggatgtaacgaaagattacttgaagtcacattagggc |
31331863 |
T |
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| Q |
218 |
aaagagcaaggagaagtcttttaagtgtttcagggaatacgttgcaaatcattccaatgccgctgtcacttatgccagatctgttatgacagcaacccat |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31331862 |
aaagagcaaggagaagtcttttaagtgtttcagggaatacgttgcaaatcattccaatgccgctgtcacttatgccagatctgttatgacagcaacccat |
31331763 |
T |
|
| Q |
318 |
caaacttgatttcttaaacaaagacatggtaattnnnnnnntatgtatttgaaatataagttcttatactaaaacttcgattgtaatttatctatggtat |
417 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31331762 |
caaacttgatttcttaaacaaagacatggtaattaaaaaaatatgtatttgaaatataagttcttatactaaaacttcgattgtaatttatctatggtat |
31331663 |
T |
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| Q |
418 |
tgagttccatc |
428 |
Q |
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| T |
31331662 |
tgagttccatc |
31331652 |
T |
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