View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11835_low_29 (Length: 441)
Name: NF11835_low_29
Description: NF11835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11835_low_29 |
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Alignment Details
Target: chr3 (Bit Score: 172; Significance: 3e-92; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 192 - 430
Target Start/End: Original strand, 55160321 - 55160567
Alignment:
| Q |
192 |
gcttacattgtcatccaatagaattcagccatgtcttatctctttaattgaattaaaaattaattttagaaacgag-taattatgcagattatgctaatt |
290 |
Q |
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| T |
55160321 |
gcttacattgtcatccaatagaattcagccatgtcttatctctttaattgaattaaaaattaattttagaaacgagaaaattatgcagattatgctaact |
55160420 |
T |
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| Q |
291 |
gcgattgtccctgtgagccaatacataatac-------gtcggccgtnnnnnnntaaaatgcaaaccatcctttttcaccacaaccgtcgtggcattgca |
383 |
Q |
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| T |
55160421 |
gcgattgtccctgtgagccaatacataatacatacaagttgggctgtaaaaaaataaaatgcaaaccatcctttttcaccacaaccgtcgtggcattgca |
55160520 |
T |
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| Q |
384 |
atcttataaacttccaattataaaatgccaggtggatctactttcat |
430 |
Q |
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| T |
55160521 |
atcttataaacttccaattataaaatgccaggtggatctactttcat |
55160567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 69 - 126
Target Start/End: Original strand, 55160198 - 55160255
Alignment:
| Q |
69 |
atttatatgtttgtgcgatcaaataaagttcaaatctttgtgtctacacaagaattgc |
126 |
Q |
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| T |
55160198 |
atttatatgtttgtgcgatcaaataaagttcaaatctttgtgtctacacaaaaattgc |
55160255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 201 - 264
Target Start/End: Complemental strand, 4997639 - 4997579
Alignment:
| Q |
201 |
gtcatccaatagaattcagccatgtcttatctctttaattgaattaaaaattaattttagaaac |
264 |
Q |
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| T |
4997639 |
gtcatccaataaaattcagccacgtcat---tctttaatagaattaaaaattaattttagaaac |
4997579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 194 - 245
Target Start/End: Original strand, 11523929 - 11523980
Alignment:
| Q |
194 |
ttacattgtcatccaatagaattcagccatgtcttatctctttaattgaatt |
245 |
Q |
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| T |
11523929 |
ttacactgtcatccaatagaattcagtcatgtcatatctctttaattgaatt |
11523980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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