View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11835_low_30 (Length: 435)
Name: NF11835_low_30
Description: NF11835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11835_low_30 |
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Alignment Details
Target: chr3 (Bit Score: 385; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 1 - 421
Target Start/End: Complemental strand, 47819733 - 47819313
Alignment:
| Q |
1 |
acatgcgaccacctcatatcctccaaatcccccaaaagattccgtaatagttgctcctcccaatcaaaaaactccctcctccactcaaaatgccactccg |
100 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
47819733 |
acatgcgaccacctcatatcctccaaatcacccaaaagattccctattagttgctcctcccaatcaaaaaactccctcctccactcaaaatgtcactccg |
47819634 |
T |
|
| Q |
101 |
ttgaagagccaactacctcccctatctctcccaccaacccctccttttgatttgaaatagagaagagtctagggtatttactcctaaacgtccgatcacc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47819633 |
ttgaagagccaactacctcccctatctctcccaccaacccctccttttgatttgaaatagagaagagtctagggtatttactcctaaacgtccgatcacc |
47819534 |
T |
|
| Q |
201 |
cttccatttagcattccaaaagctagtattcaatccattccccacaactctcattaactccgaattaaaccacccatgaactccaaaattctctaaatta |
300 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |||||||||||||||||||||||| |
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| T |
47819533 |
cttccatttagcattccaaaagctagtattcaatccattccccacaactctcactaactccgagttaaaccacccttgaactccaaaattctctaaatta |
47819434 |
T |
|
| Q |
301 |
acaacatctttccaccaagaagaggcactcctccaatgagaacacaactccccatccaacatagcagttacttgcggaccatacttttccaccaacactt |
400 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
47819433 |
acaacatccttccaccaagaagaggcactcctccaatgagaacacaactccccatccaacatagtagttacttgcggaccatacttttccaccaacactt |
47819334 |
T |
|
| Q |
401 |
ccttccacaaagccacttccc |
421 |
Q |
| |
|
||||||||||||||||||||| |
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| T |
47819333 |
ccttccacaaagccacttccc |
47819313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 49 - 337
Target Start/End: Complemental strand, 28571232 - 28570944
Alignment:
| Q |
49 |
agttgctcctcccaatcaaaaaactccctcctccactcaaaatgccactccgttgaagagccaactacctcccctatctctcccaccaacccctcctttt |
148 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||||||||||| || |||||||||||||||| || ||||||||||| || || |||| | || |||| |
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| T |
28571232 |
agttgctcctcccaatcaaaaatgtcccgcctccactcaaaacgcgactccgttgaagagcctaccacctcccctatatcacctaccatcgattcttttt |
28571133 |
T |
|
| Q |
149 |
gatttgaaatagagaagagtctagggtatttactcctaaacgtccgatcacccttccatttagcattccaaaagctagtattcaatccattccccacaac |
248 |
Q |
| |
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| |||||||| ||||||||||| ||||||||||||||||| || ||| || ||| ||| ||||||||| |||| ||| |||||| || | | |
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| T |
28571132 |
ggtttgaaatcgagaagagtcttgggtatttactcctaaaagttgtatcccctcgccacttaatattccaaaaactagagttccttccattgccaatgat |
28571033 |
T |
|
| Q |
249 |
tctcattaactccgaattaaaccacccatgaactccaaaattctctaaattaacaacatctttccaccaagaagaggcactcctccaat |
337 |
Q |
| |
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||| |||||||| ||||||||||||| || | ||||| || |||||||| || ||||| ||||||||| ||| |||| |||||||| |
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| T |
28571032 |
tctagttaactccaaattaaaccacccttgggcaccaaagttttctaaatttaccacatccttccaccaaagagaagcacacctccaat |
28570944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 69; Significance: 8e-31; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 2 - 194
Target Start/End: Original strand, 12825967 - 12826159
Alignment:
| Q |
2 |
catgcgaccacctcatatcctccaaatcccccaaaagattccgtaatagttgctcctcccaatcaaaaaactccctcctccactcaaaatgccactccgt |
101 |
Q |
| |
|
|||| ||||||||||||| ||||||||| ||| ||| || |||||||||||||||||| ||||||||||||| |||||||| |||||||||| ||| |
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| T |
12825967 |
catgagaccacctcatattctccaaatcattcaagagactcacaaatagttgctcctcccaaccaaaaaactcccttctccactcgaaatgccacttcgt |
12826066 |
T |
|
| Q |
102 |
tgaagagccaactacctcccctatctctcccaccaacccctccttttgatttgaaatagagaagagtctagggtatttactcctaaacgtccg |
194 |
Q |
| |
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| | || ||||| ||||||||||||| ||||| || ||||||||| ||||| || ||| | |||||||| ||||||||| |||||||||| |
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| T |
12826067 |
taaggaaccaaccgcctcccctatctcccccacacacaactccttttggtttgacattgagtaaagtctaggatatttactcttaaacgtccg |
12826159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 49 - 136
Target Start/End: Complemental strand, 24189025 - 24188938
Alignment:
| Q |
49 |
agttgctcctcccaatcaaaaaactccctcctccactcaaaatgccactccgttgaagagccaactacctcccctatctctcccacca |
136 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||||||||||||||||||| |||||||||| || ||||||||||| || ||||||| |
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| T |
24189025 |
agttgctcctcccaatcaaaaaaatcccgtctccactcaaaatgccactcccttgaagagcctaccacctcccctatgtcacccacca |
24188938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 49 - 337
Target Start/End: Original strand, 42749402 - 42749690
Alignment:
| Q |
49 |
agttgctcctcccaatcaaaaaactccctcctccactcaaaatgccactccgttgaagagccaactacctcccctatctctcccaccaacccctcctttt |
148 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| ||||| | |||| ||||| ||| ||| | ||||||||||||||||||||| || |||| |
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| T |
42749402 |
agttgctcctcccaatcaaaaaactcccatctccaatcaaagttccacaccgttaaagcaccatcctcctcccctatctctcccaccattgattcttttt |
42749501 |
T |
|
| Q |
149 |
gatttgaaatagagaagagtctagggtatttactcctaaacgtccgatcacccttccatttagcattccaaaagctagtattcaatccattccccacaac |
248 |
Q |
| |
|
||||||| || | || | ||||||||||||||||||||||| ||| || || |||||||| | ||||||| ||||| ||| || ||||| | | |
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|
| T |
42749502 |
gatttgagatcaaaaacaatctagggtatttactcctaaacgaccgctcccctcgccatttagtactccaaaaactagtgctcataccgttcccaatgat |
42749601 |
T |
|
| Q |
249 |
tctcattaactccgaattaaaccacccatgaactccaaaattctctaaattaacaacatctttccaccaagaagaggcactcctccaat |
337 |
Q |
| |
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||| | |||||| | ||||||||||| ||| || ||| | |||||||| |||||||| ||||||||| | || ||| ||||||||| |
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|
| T |
42749602 |
tctaaccaactcctagttaaaccacccttgagtgccgaaactatctaaattgacaacatccttccaccaacacgaagcaatcctccaat |
42749690 |
T |
|
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