View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11835_low_32 (Length: 427)
Name: NF11835_low_32
Description: NF11835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11835_low_32 |
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Alignment Details
Target: chr3 (Bit Score: 384; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 14 - 409
Target Start/End: Original strand, 45106246 - 45106641
Alignment:
| Q |
14 |
gaatctgtttgatgaacaaagcgagtcactaagattccaaccgagcatggagattttcccaagatgttgcggtttaaagaccttatgtccttgtcatcat |
113 |
Q |
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| T |
45106246 |
gaatctgtttgatgaacaaagcgagtcactaagattccaaccgagcatggagatttttccaagatgttgcggtttaaagaccttatgttcttgtcatcat |
45106345 |
T |
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| Q |
114 |
attcaagctttccatcacttgaccattttttatgaaaaggaagaaatataattgatgaaactttatccaatgctaggtgacaaacatcttcatgcattaa |
213 |
Q |
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| T |
45106346 |
attcaagctttccatcacttgaccattttttatgaaaaggaagaaatataattgatgaaactttatccaatgctaggtgacaaacatcttcatgcattaa |
45106445 |
T |
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| Q |
214 |
gttaagtggagatatagcagtataagggtttactattgctgcgccttgtttatcactctcgtatagtttgagacttaaaacaacattatcagagtatgag |
313 |
Q |
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| T |
45106446 |
gttaagtggagatatagcagtatatgggtttactattgctgcgccttgtttatcactctcgtatagtttgagacttaaaacaacattatcagagtatgag |
45106545 |
T |
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| Q |
314 |
tcatgcaagtttaaagaaacaactttcttctttttgtgagaaatgaaaatgggtgaagcccttccggctaactcgattaaatgcaaggcatctacg |
409 |
Q |
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| T |
45106546 |
tcatgcaagtttaaagaaacaactttcttctttttgtgagaaatgaaaatgggtgaagcccttccggctaactcgattaaatgcaaggcatctacg |
45106641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 205
Target Start/End: Complemental strand, 37840988 - 37840908
Alignment:
| Q |
125 |
ccatcacttgaccattttttatgaaaaggaagaaatataattgatgaaactttatccaatgctaggtgacaaacatcttca |
205 |
Q |
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| T |
37840988 |
ccatcacttgaccatgttatatgaaatggaagaattataatggttgcaactttgtctaatgcaagattacaaacatcttca |
37840908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 103 - 205
Target Start/End: Original strand, 38381258 - 38381360
Alignment:
| Q |
103 |
cttgtcatcatattcaagctttccatcacttgaccattttttatgaaaaggaagaaatataattgatgaaactttatccaatgctaggtgacaaacatct |
202 |
Q |
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| T |
38381258 |
cttgtcatcagattcaacttcaccatcacttgaccatcttatatgaaatggaagaatgatgatggttgcaactttgtccaatgcaagattacaaacatct |
38381357 |
T |
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| Q |
203 |
tca |
205 |
Q |
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||| |
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| T |
38381358 |
tca |
38381360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 125 - 205
Target Start/End: Original strand, 38398909 - 38398989
Alignment:
| Q |
125 |
ccatcacttgaccattttttatgaaaaggaagaaatataattgatgaaactttatccaatgctaggtgacaaacatcttca |
205 |
Q |
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||||||||||||||| || ||||||| ||||||| || || | || |||||| |||||||| || | ||||||||||||| |
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| T |
38398909 |
ccatcacttgaccatcttatatgaaatggaagaatgatgatggttgcaactttgtccaatgcaagattacaaacatcttca |
38398989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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