View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11835_low_35 (Length: 421)
Name: NF11835_low_35
Description: NF11835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11835_low_35 |
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| [»] scaffold0130 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 122; Significance: 2e-62; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 253 - 410
Target Start/End: Complemental strand, 50644845 - 50644688
Alignment:
| Q |
253 |
aaatttcgaaagctcttttcaataaccgcttgattttaaatgcataactctacactcacagtaacgaaccttctccctgtctttcctctgcaaggtttta |
352 |
Q |
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| T |
50644845 |
aaatctcgaaagctcttttcaataaccgcttgattttaaatgcataactctacattcacagtaacgaaccttctccctgtctttcctctgcaaggtttta |
50644746 |
T |
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| Q |
353 |
ctaaggtattgagttttgtttaggaagagagtnnnnnnnntacatgtgttaccttcat |
410 |
Q |
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| T |
50644745 |
ctaaggtattgggttttgtttaggaagagagtgaaaaaaatacatgtgttaccttcat |
50644688 |
T |
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Target: chr1; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 50644931 - 50644842
Alignment:
| Q |
19 |
aaagactagagcaagttttgacactgaacagtggccaaaaacacactcacgtacgtacagagagagattgtatgagaataaaaccaaaat |
108 |
Q |
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| T |
50644931 |
aaagactagagcaagttttgacactgaacagtggccaaaaacacactcacgtatgtacagagagagattgtatgagaataaaaccaaaat |
50644842 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0130 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0130
Description:
Target: scaffold0130; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 81 - 167
Target Start/End: Original strand, 23662 - 23748
Alignment:
| Q |
81 |
agagattgtatgagaataaaaccaaaattttatcccaagtcagaagcatcaatagggaatgaatgcaccactattagtctttcaaag |
167 |
Q |
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| T |
23662 |
agagattgcatgagaataaaaccaaaatttgatttgaagtcagaggtatctataagggatgaatacaccactattagtctttcaaag |
23748 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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