View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11835_low_38 (Length: 417)
Name: NF11835_low_38
Description: NF11835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11835_low_38 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 134 - 404
Target Start/End: Original strand, 4189725 - 4189998
Alignment:
| Q |
134 |
ttgttgtcatttttgtattgtagtgtgttagtcgaacggacaa----acgagccgaatctaacgagttgaatagagttattcacctatctagacaagtta |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4189725 |
ttgttgtcatttttgtattgtagtgtgttagtcgaacgaacaattaaacgagccgaatctaatgagttgaatagagttattcacctatctagacaagtta |
4189824 |
T |
|
| Q |
230 |
aactagaactaaaagaaatattcacatcaaattggttgagtttcaaaccgaatcaattcttattgagttggggtcaaattttacggagtttgactaaatc |
329 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| | |
|
|
| T |
4189825 |
aactagaactaaaagaaatatacacatcaaattggttgagtttcaaatcgaatcaattcttattgagtt-gggtcaaattttacggagtttgactaaacc |
4189923 |
T |
|
| Q |
330 |
gacttatttcatttccagtcatatttacaatattgtagaagatccaaacatgttagacaaatttggattgtctgt |
404 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4189924 |
gacttatttcatttcgagtcatatttacaatattgtagaagatccaaacatgttagacaaatttggattgtctgt |
4189998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 3 - 81
Target Start/End: Original strand, 4189597 - 4189675
Alignment:
| Q |
3 |
gtagatctgaacattatatttgtgtcagttacacaccttatgcttaagatagattttatttttgttcaatctttgcatt |
81 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4189597 |
gtagatctgaactttatatttgtgtcagttacacaccttatgcttaagatagattttatttttgttcaatctttgcatt |
4189675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University