View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11835_low_43 (Length: 400)
Name: NF11835_low_43
Description: NF11835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11835_low_43 |
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Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 19 - 345
Target Start/End: Complemental strand, 3596582 - 3596269
Alignment:
| Q |
19 |
aagtagcagttgaactgtaaaccaaatgttgctatatagaaacgtctgatgcaaaacaaaaaagatagatagaaaa------cctttgaatttatgagtc |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |
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| T |
3596582 |
aagtagcagttgaactgtaaaccaaatgttgctatatagaaacgtctgatgcaaaacaaaaaagacagatagaaaattctaacctttgaatttatgagtc |
3596483 |
T |
|
| Q |
113 |
ggattaatcaaagaaattacacttgtaaatatacatgacggaggaatgaccaaacaatgaatattgttgaaatcgtcatcctcatcatcaagcattggat |
212 |
Q |
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||||||||||||||||| |||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3596482 |
ggattaatcaaagaaatcacacttataaacatacaccacggaggaatgaccaaacaatgaatattgttgaaatcgtcatcctcatcatcaagcattggat |
3596383 |
T |
|
| Q |
213 |
ccaattaataagtatttttaaccttaagctatatagtattttaacaagtaccaagacataaacgtcgataatagtcaaattctaagtatttaatctagaa |
312 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
3596382 |
----ttaa---------------ttaagctatatagtattttaacaagtaccaagacataaacatcgataatagtcaaattctaagtatttaatctagaa |
3596302 |
T |
|
| Q |
313 |
aatctttaaaatttaataagaatgttccatttg |
345 |
Q |
| |
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||||||||||||||||| ||||| ||||||||| |
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| T |
3596301 |
aatctttaaaatttaatcagaatattccatttg |
3596269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 54 - 213
Target Start/End: Complemental strand, 3573562 - 3573397
Alignment:
| Q |
54 |
atagaaacgtctgatgcaaaacaaaaaagatagatagaaaa------cctttgaatttatgagtcggattaatcaaagaaattacacttgtaaatataca |
147 |
Q |
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|||||||||||||||| |||||||||||||||||||||||| |||| |||||||||| ||||||||||||||||||| ||||||||||||||||| |
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| T |
3573562 |
atagaaacgtctgatgaaaaacaaaaaagatagatagaaaattctaaccttcgaatttatgaatcggattaatcaaagaaatcacacttgtaaatataca |
3573463 |
T |
|
| Q |
148 |
tgacggaggaatgaccaaacaatgaatattgttgaaatcgtcatcctcatcatcaagcattggatc |
213 |
Q |
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|
|||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |
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| T |
3573462 |
tgacggaggaatgaccaaacaaaggatattgttgaaatcgtcatcctcatcatcaagcattggatc |
3573397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 93 - 213
Target Start/End: Complemental strand, 3586230 - 3586110
Alignment:
| Q |
93 |
aacctttgaatttatgagtcggattaatcaaagaaattacacttgtaaatatacatgacggaggaatgaccaaacaatgaatattgttgaaatcgtcatc |
192 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||| | || |||||||||| |||||| |
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| T |
3586230 |
aacctttgaatttatgagtcggattaatcaaagaaatcacactcgtaaatatacatgacggaggattgaccaaacaaaggatgttgttgaaatagtcatc |
3586131 |
T |
|
| Q |
193 |
ctcatcatcaagcattggatc |
213 |
Q |
| |
|
|||| |||||||||||||||| |
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|
| T |
3586130 |
ctcaacatcaagcattggatc |
3586110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 114 - 213
Target Start/End: Complemental strand, 3595345 - 3595246
Alignment:
| Q |
114 |
gattaatcaaagaaattacacttgtaaatatacatgacggaggaatgaccaaacaatgaatattgttgaaatcgtcatcctcatcatcaagcattggatc |
213 |
Q |
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|
|||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||||||| |||||||||||||| |
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| T |
3595345 |
gattaatcaaagaaatcacactcgtaaatatacatgacggtggaatgaccaaacaaaggatattgttgaaatcgtcatcctcatcgtcaagcattggatc |
3595246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 213
Target Start/End: Complemental strand, 3568210 - 3568134
Alignment:
| Q |
137 |
gtaaatatacatgacggaggaatgaccaaacaatgaatattgttgaaatcgtcatcctcatcatcaagcattggatc |
213 |
Q |
| |
|
||||||||| ||| | || |||||||||||||| ||| |||||||||| |||||||| ||| ||||||| ||||| |
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| T |
3568210 |
gtaaatatatatggctgatgaatgaccaaacaaaagataatgttgaaatcatcatcctcctcaacaagcatcggatc |
3568134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 69; Significance: 7e-31; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 232 - 345
Target Start/End: Original strand, 4375783 - 4375902
Alignment:
| Q |
232 |
aaccttaagctatatagtatt------ttaacaagtaccaagacataaacgtcgataatagtcaaattctaagtatttaatctagaaaatctttaaaatt |
325 |
Q |
| |
|
||||||||||||||||||||| |||| |||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||| ||||| |
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| T |
4375783 |
aaccttaagctatatagtattaagcttttaaaaagtaccaagacataaacatcaataatagtcaaattctaggtatttaatctagaaaatctttcaaatt |
4375882 |
T |
|
| Q |
326 |
taataagaatgttccatttg |
345 |
Q |
| |
|
|||| ||||| ||||||||| |
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| T |
4375883 |
taatcagaatcttccatttg |
4375902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 251 - 345
Target Start/End: Original strand, 4388481 - 4388575
Alignment:
| Q |
251 |
ttttaacaagtaccaagacataaacgtcgataatagtcaaattctaagtatttaatctagaaaatctttaaaatttaataagaatgttccatttg |
345 |
Q |
| |
|
|||||||||||||||||| |||||| ||||||| |||||||||||| |||||||||||||||||||||| ||||||||| ||||| ||||||||| |
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| T |
4388481 |
ttttaacaagtaccaagatataaacatcgataacagtcaaattctaggtatttaatctagaaaatctttcaaatttaatcagaatcttccatttg |
4388575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 252 - 307
Target Start/End: Original strand, 4383423 - 4383476
Alignment:
| Q |
252 |
tttaacaagtaccaagacataaacgtcgataatagtcaaattctaagtatttaatc |
307 |
Q |
| |
|
||||||||||||||||| ||||| |||||||||||||||||||| |||||||||| |
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| T |
4383423 |
tttaacaagtaccaaga--taaacatcgataatagtcaaattctaggtatttaatc |
4383476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 284 - 344
Target Start/End: Complemental strand, 5727019 - 5726959
Alignment:
| Q |
284 |
tagtcaaattctaagtatttaatctagaaaatctttaaaatttaataagaatgttccattt |
344 |
Q |
| |
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||||||||||||| |||||||||||||||||| ||| ||||| ||| ||||| | |||||| |
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| T |
5727019 |
tagtcaaattctatgtatttaatctagaaaatatttcaaattcaattagaatctcccattt |
5726959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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