View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11835_low_44 (Length: 399)

Name: NF11835_low_44
Description: NF11835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11835_low_44
NF11835_low_44
[»] scaffold0203 (2 HSPs)
scaffold0203 (51-381)||(28855-29202)
scaffold0203 (1-51)||(28766-28816)
[»] scaffold0390 (2 HSPs)
scaffold0390 (242-381)||(12804-12943)
scaffold0390 (265-381)||(5811-5927)
[»] chr4 (23 HSPs)
chr4 (236-381)||(19925609-19925753)
chr4 (236-381)||(19919380-19919524)
chr4 (243-381)||(20579292-20579430)
chr4 (248-381)||(5715162-5715295)
chr4 (237-381)||(18263401-18263545)
chr4 (243-381)||(8859381-8859519)
chr4 (243-381)||(10620188-10620326)
chr4 (243-381)||(28392022-28392160)
chr4 (237-381)||(869810-869953)
chr4 (237-377)||(18270266-18270406)
chr4 (243-381)||(26964760-26964896)
chr4 (243-381)||(26971654-26971790)
chr4 (243-381)||(55613897-55614035)
chr4 (261-380)||(5708527-5708646)
chr4 (243-381)||(10825209-10825345)
chr4 (237-382)||(5667043-5667188)
chr4 (254-381)||(10676453-10676582)
chr4 (254-381)||(10890093-10890222)
chr4 (256-381)||(4425501-4425633)
chr4 (243-381)||(47387808-47387948)
chr4 (248-381)||(35224741-35224878)
chr4 (297-381)||(10627329-10627408)
chr4 (327-361)||(27031782-27031816)
[»] chr6 (12 HSPs)
chr6 (243-381)||(17690320-17690458)
chr6 (243-381)||(27380107-27380245)
chr6 (243-381)||(27470490-27470628)
chr6 (243-381)||(29310079-29310217)
chr6 (243-381)||(29317038-29317176)
chr6 (242-381)||(11652887-11653026)
chr6 (255-381)||(27278556-27278682)
chr6 (255-381)||(27297848-27297974)
chr6 (255-381)||(27303447-27303573)
chr6 (328-381)||(18336778-18336831)
chr6 (336-381)||(17683430-17683475)
chr6 (243-326)||(16393359-16393442)
[»] chr3 (25 HSPs)
chr3 (243-381)||(8491573-8491711)
chr3 (243-381)||(10578212-10578350)
chr3 (243-381)||(15599764-15599902)
chr3 (243-381)||(15606309-15606447)
chr3 (243-381)||(6111289-6111427)
chr3 (243-381)||(13212489-13212627)
chr3 (243-381)||(13691871-13692009)
chr3 (243-381)||(10571445-10571584)
chr3 (243-381)||(13258734-13258872)
chr3 (248-381)||(17780049-17780181)
chr3 (248-381)||(19081350-19081482)
chr3 (237-381)||(18534826-18534969)
chr3 (243-381)||(13517998-13518136)
chr3 (243-381)||(16481338-16481476)
chr3 (256-381)||(1646389-1646514)
chr3 (256-382)||(32055308-32055434)
chr3 (256-381)||(15341112-15341237)
chr3 (243-381)||(18538184-18538322)
chr3 (256-381)||(15356479-15356604)
chr3 (256-380)||(23014236-23014360)
chr3 (243-381)||(16201408-16201546)
chr3 (243-321)||(12564395-12564473)
chr3 (289-336)||(17196702-17196749)
chr3 (327-381)||(25801382-25801436)
chr3 (286-333)||(6288241-6288288)
[»] scaffold0657 (1 HSPs)
scaffold0657 (243-381)||(3906-4044)
[»] chr1 (9 HSPs)
chr1 (243-381)||(27130277-27130415)
chr1 (237-381)||(18531388-18531531)
chr1 (243-381)||(18253219-18253357)
chr1 (243-381)||(27309433-27309571)
chr1 (256-381)||(16357926-16358051)
chr1 (248-381)||(21169309-21169427)
chr1 (248-381)||(22640732-22640869)
chr1 (342-381)||(9075856-9075895)
chr1 (256-321)||(9075786-9075851)
[»] scaffold0234 (2 HSPs)
scaffold0234 (237-381)||(10086-10230)
scaffold0234 (237-381)||(1193-1337)
[»] scaffold0061 (1 HSPs)
scaffold0061 (249-381)||(5082-5214)
[»] chr7 (14 HSPs)
chr7 (242-382)||(11541859-11541999)
chr7 (243-381)||(2652868-2653006)
chr7 (243-381)||(12752048-12752186)
chr7 (237-382)||(11534936-11535081)
chr7 (248-381)||(29328977-29329110)
chr7 (243-381)||(15153656-15153795)
chr7 (237-381)||(12739731-12739873)
chr7 (249-382)||(9979016-9979151)
chr7 (243-382)||(18256697-18256837)
chr7 (243-382)||(18562221-18562365)
chr7 (249-347)||(11557101-11557199)
chr7 (298-342)||(22947653-22947697)
chr7 (286-321)||(7748213-7748248)
chr7 (297-381)||(30926284-30926370)
[»] scaffold0026 (1 HSPs)
scaffold0026 (243-382)||(26401-26540)
[»] scaffold0433 (1 HSPs)
scaffold0433 (243-381)||(8297-8435)
[»] chr5 (8 HSPs)
chr5 (254-381)||(24694351-24694478)
chr5 (254-381)||(24701120-24701247)
chr5 (256-381)||(18565350-18565475)
chr5 (254-364)||(19713397-19713508)
chr5 (250-365)||(28718844-28718960)
chr5 (285-381)||(39539718-39539817)
chr5 (286-323)||(17297916-17297953)
chr5 (243-323)||(22546245-22546323)
[»] scaffold1199 (1 HSPs)
scaffold1199 (243-381)||(314-452)
[»] scaffold0220 (1 HSPs)
scaffold0220 (243-381)||(19502-19640)
[»] chr8 (12 HSPs)
chr8 (243-381)||(15327412-15327550)
chr8 (243-381)||(15507781-15507919)
chr8 (254-374)||(28549230-28549350)
chr8 (243-381)||(6095335-6095473)
chr8 (243-381)||(21941856-21941994)
chr8 (256-381)||(22172674-22172799)
chr8 (256-380)||(24644138-24644263)
chr8 (248-381)||(24795872-24796005)
chr8 (249-340)||(29230589-29230680)
chr8 (243-319)||(27660718-27660795)
chr8 (297-382)||(17089258-17089347)
chr8 (294-323)||(42147328-42147357)
[»] scaffold0213 (1 HSPs)
scaffold0213 (243-381)||(4429-4567)
[»] chr2 (5 HSPs)
chr2 (256-381)||(22790726-22790851)
chr2 (243-377)||(18621029-18621164)
chr2 (249-382)||(41664953-41665089)
chr2 (325-381)||(27353547-27353602)
chr2 (290-365)||(12298996-12299072)
[»] scaffold0705 (1 HSPs)
scaffold0705 (256-381)||(7532-7657)
[»] scaffold0032 (1 HSPs)
scaffold0032 (243-381)||(107127-107265)
[»] scaffold0063 (1 HSPs)
scaffold0063 (243-382)||(6716-6856)
[»] scaffold1303 (1 HSPs)
scaffold1303 (274-381)||(892-999)
[»] scaffold0039 (1 HSPs)
scaffold0039 (254-382)||(87899-88028)
[»] scaffold0008 (1 HSPs)
scaffold0008 (237-380)||(229258-229404)
[»] scaffold0502 (1 HSPs)
scaffold0502 (242-381)||(235-374)


Alignment Details
Target: scaffold0203 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: scaffold0203
Description:

Target: scaffold0203; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 51 - 381
Target Start/End: Original strand, 28855 - 29202
Alignment:
Q  51 ctacatacaaatgatctgaatatcatcaaatctcatattatattactatcgatcaggtcaaacaattcaaccgatgtatatcacatatacaaaatcgaaa 150  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28855 ctacatacaaatgatctgaatatcatcaaatctcatattatattactatcgatcaggtcaaacaattcaaccgatgtatatcacatatacaaaatcgaaa 28954  T
Q  151 ataatattccaagagcactgaatcatattcaagcgatgataatttaattttgaatttaatgattcaatc--------agctctgataccactgaagggat 242  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||        |||||||||||||||||||||||    
T  28955 ataatattccaagagcactgaatcatattcaagcgatgataatttaaatttgaatttaatgattcaatcacaaccgaagctctgataccactgaagggat 29054  T
Q  243 -----------ttttccaaaaatttaatcctctttgcggaagaaatcccattaaaacggatcttaattaaatcattaatcacaaatcaaacagaaactta 331  Q
               |||| ||||| |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||    
T  29055 tttaagaggggtttttcaaaattttaatcctctttgcggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaacagaaactta 29154  T
Q  332 aacactttaagattcatgtgtttacctcttgaagagcagaacctttgtag 381  Q
    |||||||||||||||  |||||||||||||||||||||||||||||||||    
T  29155 aacactttaagattc--gtgtttacctcttgaagagcagaacctttgtag 29202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0203; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 28766 - 28816
Alignment:
Q  1 atcagtacgaacataaaaacgtaaggatgatgacaaagttgaaacaatttc 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28766 atcagtacgaacataaaaacgtaaggatgatgacaaagttgaaacaatttc 28816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0390 (Bit Score: 128; Significance: 5e-66; HSPs: 2)
Name: scaffold0390
Description:

Target: scaffold0390; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 242 - 381
Target Start/End: Original strand, 12804 - 12943
Alignment:
Q  242 tttttccaaaaatttaatcctctttgcggaagaaatcccattaaaacggatcttaattaaatcattaatcacaaatcaaacagaaacttaaacactttaa 341  Q
    |||||| |||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  12804 tttttcaaaaattttaatcctctttgcggaagaaatcccattaaaacggatcttgattaaatcattaatcacaaatcaaacagaaacttaaacactttaa 12903  T
Q  342 gattcatgtgtttacctcttgaagagcagaacctttgtag 381  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  12904 gattcatgtgtttacctcttgaagagcagaacctttgtag 12943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0390; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 265 - 381
Target Start/End: Original strand, 5811 - 5927
Alignment:
Q  265 ttgcggaagaaatcccattaaaacggatcttaattaaatcattaatcacaaatcaaacagaaacttaaacactttaagattcatgtgtttacctcttgaa 364  Q
    ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  5811 ttgcggaagaaatcccattaaaacggatcttgattaaattattaatcacaaatcaaacagaaacttaaacactttaagattcatgtgtttacctcctgaa 5910  T
Q  365 gagcagaacctttgtag 381  Q
    |||||||||||||||||    
T  5911 gagcagaacctttgtag 5927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 126; Significance: 7e-65; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 236 - 381
Target Start/End: Original strand, 19925609 - 19925753
Alignment:
Q  236 aagggatttttccaaaaatttaatcctctttgcggaagaaatcccattaaaacggatcttaattaaatcattaatcacaaatcaaacagaaacttaaaca 335  Q
    |||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  19925609 aagggatttttc-aaaaatttaatcctctttgcggaagaaatcccaataaaacggatcttgattaaatcattaatcacaaatcaaacagaaacttaaaca 19925707  T
Q  336 ctttaagattcatgtgtttacctcttgaagagcagaacctttgtag 381  Q
    |||||||||||||||||||||||||||||||||| |||||||||||    
T  19925708 ctttaagattcatgtgtttacctcttgaagagcacaacctttgtag 19925753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 236 - 381
Target Start/End: Original strand, 19919380 - 19919524
Alignment:
Q  236 aagggatttttccaaaaatttaatcctctttgcggaagaaatcccattaaaacggatcttaattaaatcattaatcacaaatcaaacagaaacttaaaca 335  Q
    |||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  19919380 aagggatttttc-aaaaatttaatcctctttgcggaagaaatcccaatgaaacggatcttgattaaatcattaatcacaaatcaaacagaaacttaaaca 19919478  T
Q  336 ctttaagattcatgtgtttacctcttgaagagcagaacctttgtag 381  Q
    |||||||||||||||||||||||||||||||||| |||||||||||    
T  19919479 ctttaagattcatgtgtttacctcttgaagagcacaacctttgtag 19919524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 243 - 381
Target Start/End: Original strand, 20579292 - 20579430
Alignment:
Q  243 ttttccaaaaatttaatcctctttgcggaagaaatcccattaaaacggatcttaattaaatcattaatcacaaatcaaacagaaacttaaacactttaag 342  Q
    |||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||    
T  20579292 tttttcaaaaatttaatcctctttgcggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaatagaaacttaaacactttaag 20579391  T
Q  343 attcatgtgtttacctcttgaagagcagaacctttgtag 381  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  20579392 attcatgtgtttacctcttgaagagtagaacctttgtag 20579430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 248 - 381
Target Start/End: Complemental strand, 5715295 - 5715162
Alignment:
Q  248 caaaaatttaatcctctttgcggaagaaatcccattaaaacggatcttaattaaatcattaatcacaaatcaaacagaaacttaaacactttaagattca 347  Q
    ||||| ||||||||||||||||||||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5715295 caaaattttaatcctctttgcggaagaaatctcattgaaacggatcttgattaaatcattaatcacaaatcaaacagaaacttaaacactttaagattca 5715196  T
Q  348 tgtgtttacctcttgaagagcagaacctttgtag 381  Q
    ||||||||||||||||||||||||||||||||||    
T  5715195 tgtgtttacctcttgaagagcagaacctttgtag 5715162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 237 - 381
Target Start/End: Complemental strand, 18263545 - 18263401
Alignment:
Q  237 agggatttttccaaaaatttaatcctctttgcggaagaaatcccattaaaacggatcttaattaaatcattaatcacaaatcaaacagaaacttaaacac 336  Q
    |||| ||||| ||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||    
T  18263545 aggggttttttcaaaattttaatcctctttgcggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaatagaaacttaaacac 18263446  T
Q  337 tttaagattcatgtgtttacctcttgaagagcagaacctttgtag 381  Q
    ||||||||||||||||||||||||||| |||||||||||||||||    
T  18263445 tttaagattcatgtgtttacctcttgacgagcagaacctttgtag 18263401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 243 - 381
Target Start/End: Complemental strand, 8859519 - 8859381
Alignment:
Q  243 ttttccaaaaatttaatcctctttgcggaagaaatcccattaaaacggatcttaattaaatcattaatcacaaatcaaacagaaacttaaacactttaag 342  Q
    |||| ||||| ||||||||||||| || ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  8859519 tttttcaaaattttaatcctctttccgaaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaacagaaacttaaacactttaag 8859420  T
Q  343 attcatgtgtttacctcttgaagagcagaacctttgtag 381  Q
    |||||||||||||||||||||||||||||||||||||||    
T  8859419 attcatgtgtttacctcttgaagagcagaacctttgtag 8859381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 243 - 381
Target Start/End: Original strand, 10620188 - 10620326
Alignment:
Q  243 ttttccaaaaatttaatcctctttgcggaagaaatcccattaaaacggatcttaattaaatcattaatcacaaatcaaacagaaacttaaacactttaag 342  Q
    |||| ||||| |||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  10620188 tttttcaaaattttaatcctctttgcggaagaaatcccattgaaacagatcttgattaaatcattaatcacaaatcaaacagaaacttaaacactttaag 10620287  T
Q  343 attcatgtgtttacctcttgaagagcagaacctttgtag 381  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  10620288 attcatgtgtttacctcttgaagagcagaacctctgtag 10620326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 243 - 381
Target Start/End: Original strand, 28392022 - 28392160
Alignment:
Q  243 ttttccaaaaatttaatcctctttgcggaagaaatcccattaaaacggatcttaattaaatcattaatcacaaatcaaacagaaacttaaacactttaag 342  Q
    |||| ||||| ||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  28392022 tttttcaaaattttaatcctctttgcggaagaaatctcattgaaacggatcttgattaaatcattaatcacaaatcaaacagaaacttaaacactttaag 28392121  T
Q  343 attcatgtgtttacctcttgaagagcagaacctttgtag 381  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  28392122 attcatatgtttacctcttgaagagcagaacctttgtag 28392160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 237 - 381
Target Start/End: Complemental strand, 869953 - 869810
Alignment:
Q  237 agggatttttccaaaaatttaatcctctttgcggaagaaatcccattaaaacggatcttaattaaatcattaatcacaaatcaaacagaaacttaaacac 336  Q
    ||||||||||| ||||||||||| ||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||    
T  869953 agggatttttc-aaaaatttaattctctttgcggaagaaatcctattgaaacggatcttgattaaatcattaatcacaaatcaaatagaaacttaaacac 869855  T
Q  337 tttaagattcatgtgtttacctcttgaagagcagaacctttgtag 381  Q
    ||||||||||||||||||||||||||||||||||||| |||||||    
T  869854 tttaagattcatgtgtttacctcttgaagagcagaacatttgtag 869810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 237 - 377
Target Start/End: Complemental strand, 18270406 - 18270266
Alignment:
Q  237 agggatttttccaaaaatttaatcctctttgcggaagaaatcccattaaaacggatcttaattaaatcattaatcacaaatcaaacagaaacttaaacac 336  Q
    |||| ||||| ||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||    
T  18270406 aggggttttttcaaaattttaatcctctttgcggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaatagaaacttaaacac 18270307  T
Q  337 tttaagattcatgtgtttacctcttgaagagcagaaccttt 377  Q
    ||||||||||||||||||||||||||| |||||||||||||    
T  18270306 tttaagattcatgtgtttacctcttgacgagcagaaccttt 18270266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 243 - 381
Target Start/End: Complemental strand, 26964896 - 26964760
Alignment:
Q  243 ttttccaaaaatttaatcctctttgcggaagaaatcccattaaaacggatcttaattaaatcattaatcacaaatcaaacagaaacttaaacactttaag 342  Q
    |||| ||||| |||||||||||  ||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  26964896 tttttcaaaattttaatcctct--gcggaagaaatcccattgaaaccgatcttgattaaatcattaatcacaaatcaaacagaaacttaaacactttaag 26964799  T
Q  343 attcatgtgtttacctcttgaagagcagaacctttgtag 381  Q
    |||||||||||||||||||||||||||||||||||||||    
T  26964798 attcatgtgtttacctcttgaagagcagaacctttgtag 26964760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 243 - 381
Target Start/End: Complemental strand, 26971790 - 26971654
Alignment:
Q  243 ttttccaaaaatttaatcctctttgcggaagaaatcccattaaaacggatcttaattaaatcattaatcacaaatcaaacagaaacttaaacactttaag 342  Q
    |||| ||||| |||||||||||  ||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  26971790 tttttcaaaattttaatcctct--gcggaagaaatcccattgaaaccgatcttgattaaatcattaatcacaaatcaaacagaaacttaaacactttaag 26971693  T
Q  343 attcatgtgtttacctcttgaagagcagaacctttgtag 381  Q
    |||||||||||||||||||||||||||||||||||||||    
T  26971692 attcatgtgtttacctcttgaagagcagaacctttgtag 26971654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 243 - 381
Target Start/End: Complemental strand, 55614035 - 55613897
Alignment:
Q  243 ttttccaaaaatttaatcctctttgcggaagaaatcccattaaaacggatcttaattaaatcattaatcacaaatcaaacagaaacttaaacactttaag 342  Q
    |||| ||||| || |||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||||| | ||||||||||||||||||    
T  55614035 tttttcaaaatttaaatcctctttacggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaataaaaacttaaacactttaag 55613936  T
Q  343 attcatgtgtttacctcttgaagagcagaacctttgtag 381  Q
    |||||||||||||||||||||||||||||||||||||||    
T  55613935 attcatgtgtttacctcttgaagagcagaacctttgtag 55613897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 261 - 380
Target Start/End: Complemental strand, 5708646 - 5708527
Alignment:
Q  261 ctctttgcggaagaaatcccattaaaacggatcttaattaaatcattaatcacaaatcaaacagaaacttaaacactttaagattcatgtgtttacctct 360  Q
    ||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5708646 ctctttgtggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaacagaaacttaaacactttaagattcatgtgtttacctct 5708547  T
Q  361 tgaagagcagaacctttgta 380  Q
    |||||||||||| |||||||    
T  5708546 tgaagagcagaatctttgta 5708527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 243 - 381
Target Start/End: Original strand, 10825209 - 10825345
Alignment:
Q  243 ttttccaaaaatttaatcctctttgcggaagaaatcccattaaaacggatcttaattaaatcattaatcacaaatcaaacagaaacttaaacactttaag 342  Q
    |||| ||||| ||||||||||||||||||| |||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||      
T  10825209 tttttcaaaattttaatcctctttgcggaataaatcccattgaaacagatcttgattaaatcattaatcacaaatcaaacagaaacttaaacacttta-- 10825306  T
Q  343 attcatgtgtttacctcttgaagagcagaacctttgtag 381  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  10825307 attcatgtgtttacctcttgaagagcagaacctctgtag 10825345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 237 - 382
Target Start/End: Original strand, 5667043 - 5667188
Alignment:
Q  237 agggatttttccaaaaatttaatcctctttgcggaagaaatcccattaaaacggatcttaattaaatcattaatcacaaatcaaacagaaacttaaacac 336  Q
    ||||||||||| |||| |||||| |||| |||||||||||||  ||| ||||||||||| ||||||||||||||||||||||||||| | |||||||||     
T  5667043 agggatttttc-aaaattttaatgctctctgcggaagaaatcttattgaaacggatcttgattaaatcattaatcacaaatcaaacacatacttaaacaa 5667141  T
Q  337 tttaa-gattcatgtgtttacctcttgaagagcagaacctttgtagt 382  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||    
T  5667142 tttaaggattcatgtgtttacctcttgaagagcagaacctttgtagt 5667188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 254 - 381
Target Start/End: Original strand, 10676453 - 10676582
Alignment:
Q  254 tttaatcctctttgcggaagaaatcccatt-aaaacgga-tcttaattaaatcattaatcacaaatcaaacagaaacttaaacactttaagattcatgtg 351  Q
    |||||||||||| |||||| |||||||||| |||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||    |||||||||    
T  10676453 tttaatcctcttagcggaacaaatcccattgaaaacggaatcttgattaaatcattaatcacaaatcaaacacaaacttaaacacttacgaattcatgtg 10676552  T
Q  352 tttacctcttgaagagcagaacctttgtag 381  Q
    |||||||||||||||| |||||||||||||    
T  10676553 tttacctcttgaagagaagaacctttgtag 10676582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 254 - 381
Target Start/End: Original strand, 10890093 - 10890222
Alignment:
Q  254 tttaatcctctttgcggaagaaatcccatt-aaaacgga-tcttaattaaatcattaatcacaaatcaaacagaaacttaaacactttaagattcatgtg 351  Q
    |||||||||||| |||||| |||||||||| |||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||    |||||||||    
T  10890093 tttaatcctcttagcggaacaaatcccattgaaaacggaatcttgattaaatcattaatcacaaatcaaacacaaacttaaacacttacgaattcatgtg 10890192  T
Q  352 tttacctcttgaagagcagaacctttgtag 381  Q
    |||||||||||||||| |||||||||||||    
T  10890193 tttacctcttgaagagaagaacctttgtag 10890222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 256 - 381
Target Start/End: Original strand, 4425501 - 4425633
Alignment:
Q  256 taatcctctttgcggaagaaatcccattaaaacggatcttaattaaatcattaatcacaaatcaaacagaaacttaaacactttaagat-------tcat 348  Q
    |||||||||  |||||| ||||| |||| |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||       ||||    
T  4425501 taatcctctaagcggaacaaatctcattgaaacagatcttgattaaatcattaatcacaaatcaaacagaaacttaaacactttaagattatgtcatcat 4425600  T
Q  349 gtgtttacctcttgaagagcagaacctttgtag 381  Q
    |||||||||||||||||||| |||| |||||||    
T  4425601 gtgtttacctcttgaagagctgaacttttgtag 4425633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 243 - 381
Target Start/End: Original strand, 47387808 - 47387948
Alignment:
Q  243 ttttccaaaaatttaatcctctttgcggaagaaatcccattaaaacggatcttaattaaatcattaatcacaaatcaaacagaaacttaaacactttaag 342  Q
    |||| ||||| ||||||||||||||||||||||||| |||| ||||||||||| |||||||||||||||||| ||| |||| | | |||| || ||||||    
T  47387808 tttttcaaaattttaatcctctttgcggaagaaatctcattgaaacggatcttgattaaatcattaatcacacatctaacacatatttaagcaatttaag 47387907  T
Q  343 -attcatgtgtttacc-tcttgaagagcagaacctttgtag 381  Q
     ||||||||||||||| |  |||||||||||||||||||||    
T  47387908 aattcatgtgtttaccttgatgaagagcagaacctttgtag 47387948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 248 - 381
Target Start/End: Complemental strand, 35224878 - 35224741
Alignment:
Q  248 caaaaatttaatcctctttgcggaagaaatcccattaaaa-----cggatcttaattaaatcattaatcacaaatcaaacagaaacttaaacactttaag 342  Q
    ||||| |||||||||||   ||||| ||||||||||||||     |||||||| |||||||||| |||||||||||||||| |||||||||||||||||     
T  35224878 caaaattttaatcctctcaacggaataaatcccattaaaatgaaacggatcttgattaaatcatcaatcacaaatcaaacacaaacttaaacactttaa- 35224780  T
Q  343 attcatgtgtttacctcttgaagagcagaacctttgtag 381  Q
    ||||||||||||||||||||||| ||||||  |||||||    
T  35224779 attcatgtgtttacctcttgaagcgcagaaattttgtag 35224741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 297 - 381
Target Start/End: Original strand, 10627329 - 10627408
Alignment:
Q  297 attaaatcattaatcacaaatcaaacag-aaacttaaacactttaagattcatgtgtttacctcttgaagagcagaacctttgtag 381  Q
    |||||||||||||||||||||||||||| |||||||||||||      |||||||||||||||||||||||||||||||| |||||    
T  10627329 attaaatcattaatcacaaatcaaacagaaaacttaaacact------ttcatgtgtttacctcttgaagagcagaacctctgtag 10627408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 327 - 361
Target Start/End: Complemental strand, 27031816 - 27031782
Alignment:
Q  327 acttaaacactttaagattcatgtgtttacctctt 361  Q
    |||||||||||||||||||||||||||||||||||    
T  27031816 acttaaacactttaagattcatgtgtttacctctt 27031782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 123; Significance: 4e-63; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 243 - 381
Target Start/End: Original strand, 17690320 - 17690458
Alignment:
Q  243 ttttccaaaaatttaatcctctttgcggaagaaatcccattaaaacggatcttaattaaatcattaatcacaaatcaaacagaaacttaaacactttaag 342  Q
    |||| ||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  17690320 tttttcaaaattttaatcctctttgcggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaacagaaacttaaacactttaag 17690419  T
Q  343 attcatgtgtttacctcttgaagagcagaacctttgtag 381  Q
    |||||||||||||||||||||||||||||||||||||||    
T  17690420 attcatgtgtttacctcttgaagagcagaacctttgtag 17690458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 243 - 381
Target Start/End: Original strand, 27380107 - 27380245
Alignment:
Q  243 ttttccaaaaatttaatcctctttgcggaagaaatcccattaaaacggatcttaattaaatcattaatcacaaatcaaacagaaacttaaacactttaag 342  Q
    |||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||    
T  27380107 tttttcaaaaatttaatcctctttgcggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaatagaaacttaaacactttaag 27380206  T
Q  343 attcatgtgtttacctcttgaagagcagaacctttgtag 381  Q
    |||||||||||||||||||||||||||||||||||||||    
T  27380207 attcatgtgtttacctcttgaagagcagaacctttgtag 27380245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 243 - 381
Target Start/End: Original strand, 27470490 - 27470628
Alignment:
Q  243 ttttccaaaaatttaatcctctttgcggaagaaatcccattaaaacggatcttaattaaatcattaatcacaaatcaaacagaaacttaaacactttaag 342  Q
    |||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||    
T  27470490 tttttcaaaaatttaatcctctttgcggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaatagaaacttaaacactttaag 27470589  T
Q  343 attcatgtgtttacctcttgaagagcagaacctttgtag 381  Q
    |||||||||||||||||||||||||||||||||||||||    
T  27470590 attcatgtgtttacctcttgaagagcagaacctttgtag 27470628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 243 - 381
Target Start/End: Complemental strand, 29310217 - 29310079
Alignment:
Q  243 ttttccaaaaatttaatcctctttgcggaagaaatcccattaaaacggatcttaattaaatcattaatcacaaatcaaacagaaacttaaacactttaag 342  Q
    |||| ||||| |||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  29310217 tttttcaaaattttaatcctctttgcggaagaaatcccaatgaaacggatcttgattaaatcattaatcacaaatcaaacagaaacttaaacactttaag 29310118  T
Q  343 attcatgtgtttacctcttgaagagcagaacctttgtag 381  Q
    |||||||||||||||||||||||||||||||||||||||    
T  29310117 attcatgtgtttacctcttgaagagcagaacctttgtag 29310079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 243 - 381
Target Start/End: Complemental strand, 29317176 - 29317038
Alignment:
Q  243 ttttccaaaaatttaatcctctttgcggaagaaatcccattaaaacggatcttaattaaatcattaatcacaaatcaaacagaaacttaaacactttaag 342  Q
    |||| ||||| |||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  29317176 tttttcaaaattttaatcctctttgcggaagaaatcccaatgaaacggatcttgattaaatcattaatcacaaatcaaacagaaacttaaacactttaag 29317077  T
Q  343 attcatgtgtttacctcttgaagagcagaacctttgtag 381  Q
    |||||||||||||||||||||||||||||||||||||||    
T  29317076 attcatgtgtttacctcttgaagagcagaacctttgtag 29317038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 242 - 381
Target Start/End: Complemental strand, 11653026 - 11652887
Alignment:
Q  242 tttttccaaaaatttaatcctctttgcggaagaaatcccattaaaacggatcttaattaaatcattaatcacaaatcaaacagaaacttaaacactttaa 341  Q
    ||||| ||||| |||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||    
T  11653026 ttttttcaaaattttaatcctctttgcggaagaaatcccattgaaacgaatcttgattaaatcattaatcacaaatcaaatagaaacttaaacactttaa 11652927  T
Q  342 gattcatgtgtttacctcttgaagagcagaacctttgtag 381  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  11652926 gattcatgtgtttacctcttgaagagcagaacctttgtag 11652887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 255 - 381
Target Start/End: Complemental strand, 27278682 - 27278556
Alignment:
Q  255 ttaatcctctttgcggaagaaatcccattaaaacggatcttaattaaatcattaatcacaaatcaaacagaaacttaaacactttaagattcatgtgttt 354  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  27278682 ttaatcctctttgcggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaacagaaacttaaacactttaagattcacgtgttt 27278583  T
Q  355 acctcttgaagagcagaacctttgtag 381  Q
    |||||||||||||||||||||||||||    
T  27278582 acctcttgaagagcagaacctttgtag 27278556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 255 - 381
Target Start/End: Complemental strand, 27297974 - 27297848
Alignment:
Q  255 ttaatcctctttgcggaagaaatcccattaaaacggatcttaattaaatcattaatcacaaatcaaacagaaacttaaacactttaagattcatgtgttt 354  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  27297974 ttaatcctctttgcggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaacagaaacttaaacactttaagattcacgtgttt 27297875  T
Q  355 acctcttgaagagcagaacctttgtag 381  Q
    |||||||||||||||||||||||||||    
T  27297874 acctcttgaagagcagaacctttgtag 27297848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 255 - 381
Target Start/End: Complemental strand, 27303573 - 27303447
Alignment:
Q  255 ttaatcctctttgcggaagaaatcccattaaaacggatcttaattaaatcattaatcacaaatcaaacagaaacttaaacactttaagattcatgtgttt 354  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  27303573 ttaatcctctttgcggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaacagaaacttaaacactttaagattcacgtgttt 27303474  T
Q  355 acctcttgaagagcagaacctttgtag 381  Q
    |||||||||||||||||||||||||||    
T  27303473 acctcttgaagagcagaacctttgtag 27303447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 328 - 381
Target Start/End: Complemental strand, 18336831 - 18336778
Alignment:
Q  328 cttaaacactttaagattcatgtgtttacctcttgaagagcagaacctttgtag 381  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  18336831 cttaaacactttaaaattcatgtgtttacctcttgaagagcagaacctttgtag 18336778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 336 - 381
Target Start/End: Original strand, 17683430 - 17683475
Alignment:
Q  336 ctttaagattcatgtgtttacctcttgaagagcagaacctttgtag 381  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  17683430 ctttaagattcatgtgtttacctcttgaagagcagaacctttgtag 17683475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 243 - 326
Target Start/End: Original strand, 16393359 - 16393442
Alignment:
Q  243 ttttccaaaaatttaatcctctttgcggaagaaatcccatt-aaaacggatcttaattaaatcattaatcacaaatcaaacagaa 326  Q
    |||| |||||||||| ||||||| |||| | ||||| |||| |||||||||||| |||||||||||||||||||||||| |||||    
T  16393359 tttttcaaaaattta-tcctcttagcggtacaaatctcattgaaaacggatctttattaaatcattaatcacaaatcaaccagaa 16393442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 123; Significance: 4e-63; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 243 - 381
Target Start/End: Complemental strand, 8491711 - 8491573
Alignment:
Q  243 ttttccaaaaatttaatcctctttgcggaagaaatcccattaaaacggatcttaattaaatcattaatcacaaatcaaacagaaacttaaacactttaag 342  Q
    |||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||    
T  8491711 tttttcaaaaatttaatcctctttgcggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaatagaaacttaaacactttaag 8491612  T
Q  343 attcatgtgtttacctcttgaagagcagaacctttgtag 381  Q
    |||||||||||||||||||||||||||||||||||||||    
T  8491611 attcatgtgtttacctcttgaagagcagaacctttgtag 8491573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 243 - 381
Target Start/End: Original strand, 10578212 - 10578350
Alignment:
Q  243 ttttccaaaaatttaatcctctttgcggaagaaatcccattaaaacggatcttaattaaatcattaatcacaaatcaaacagaaacttaaacactttaag 342  Q
    |||| ||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  10578212 tttttcaaaattttaatcctctttgcggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaacagaaacttaaacactttaag 10578311  T
Q  343 attcatgtgtttacctcttgaagagcagaacctttgtag 381  Q
    |||||||||||||||||||||||||||||||||||||||    
T  10578312 attcatgtgtttacctcttgaagagcagaacctttgtag 10578350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 243 - 381
Target Start/End: Original strand, 15599764 - 15599902
Alignment:
Q  243 ttttccaaaaatttaatcctctttgcggaagaaatcccattaaaacggatcttaattaaatcattaatcacaaatcaaacagaaacttaaacactttaag 342  Q
    |||| ||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  15599764 tttttcaaaattttaatcctctttgcggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaacagaaacttaaacactttaag 15599863  T
Q  343 attcatgtgtttacctcttgaagagcagaacctttgtag 381  Q
    |||||||||||||||||||||||||||||||||||||||    
T  15599864 attcatgtgtttacctcttgaagagcagaacctttgtag 15599902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 243 - 381
Target Start/End: Original strand, 15606309 - 15606447
Alignment:
Q  243 ttttccaaaaatttaatcctctttgcggaagaaatcccattaaaacggatcttaattaaatcattaatcacaaatcaaacagaaacttaaacactttaag 342  Q
    |||| ||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  15606309 tttttcaaaattttaatcctctttgcggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaacagaaacttaaacactttaag 15606408  T
Q  343 attcatgtgtttacctcttgaagagcagaacctttgtag 381  Q
    |||||||||||||||||||||||||||||||||||||||    
T  15606409 attcatgtgtttacctcttgaagagcagaacctttgtag 15606447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 243 - 381
Target Start/End: Complemental strand, 6111427 - 6111289
Alignment:
Q  243 ttttccaaaaatttaatcctctttgcggaagaaatcccattaaaacggatcttaattaaatcattaatcacaaatcaaacagaaacttaaacactttaag 342  Q
    |||| ||||| |||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||    
T  6111427 tttttcaaaattttaatcctctttgcggaagaaatcccattgaaacggatgttgattaaatcattaatcacaaatcaaacagaaacttaaacactttaag 6111328  T
Q  343 attcatgtgtttacctcttgaagagcagaacctttgtag 381  Q
    |||||||||||||||||||||||||||||||||||||||    
T  6111327 attcatgtgtttacctcttgaagagcagaacctttgtag 6111289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 243 - 381
Target Start/End: Complemental strand, 13212627 - 13212489
Alignment:
Q  243 ttttccaaaaatttaatcctctttgcggaagaaatcccattaaaacggatcttaattaaatcattaatcacaaatcaaacagaaacttaaacactttaag 342  Q
    |||| ||||| ||||||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  13212627 tttttcaaaattttaatcctctttacggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaacagaaacttaaacactttaag 13212528  T
Q  343 attcatgtgtttacctcttgaagagcagaacctttgtag 381  Q
    |||||||||||||||||||||||||||||||||||||||    
T  13212527 attcatgtgtttacctcttgaagagcagaacctttgtag 13212489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 243 - 381
Target Start/End: Complemental strand, 13692009 - 13691871
Alignment:
Q  243 ttttccaaaaatttaatcctctttgcggaagaaatcccattaaaacggatcttaattaaatcattaatcacaaatcaaacagaaacttaaacactttaag 342  Q
    |||| ||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||    
T  13692009 tttttcaaaattttaatcctctttgcggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcatacagaaacttaaacactttaag 13691910  T
Q  343 attcatgtgtttacctcttgaagagcagaacctttgtag 381  Q
    |||||||||||||||||||||||||||||||||||||||    
T  13691909 attcatgtgtttacctcttgaagagcagaacctttgtag 13691871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 243 - 381
Target Start/End: Original strand, 10571445 - 10571584
Alignment:
Q  243 ttttccaaaaatttaatcctctttgcggaagaaatcccattaaaacggatcttaattaaatcattaatcacaaatcaaacagaaacttaaacac-tttaa 341  Q
    |||| ||||| |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||    
T  10571445 tttttcaaaattttaatcctctttgcggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaacagaaacttaaacacttttaa 10571544  T
Q  342 gattcatgtgtttacctcttgaagagcagaacctttgtag 381  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  10571545 gattcatgtgtttacctcttgaagagcagaacctttgtag 10571584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 243 - 381
Target Start/End: Complemental strand, 13258872 - 13258734
Alignment:
Q  243 ttttccaaaaatttaatcctctttgcggaagaaatcccattaaaacggatcttaattaaatcattaatcacaaatcaaacagaaacttaaacactttaag 342  Q
    |||| ||||| ||||||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||    
T  13258872 tttttcaaaattttaatcctctttacggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaacagaaacttaaacattttaag 13258773  T
Q  343 attcatgtgtttacctcttgaagagcagaacctttgtag 381  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  13258772 attcatgtgtttacctcttgaagagtagaacctttgtag 13258734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 248 - 381
Target Start/End: Original strand, 17780049 - 17780181
Alignment:
Q  248 caaaaatttaatcctctttgcggaagaaatcccattaaaacggatcttaattaaatcattaatcacaaatcaaacagaaacttaaacactttaagattca 347  Q
    ||||| ||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  17780049 caaaattttaatcctctttgcggaagaaatcccatgaaa-cggatcttgattaaatcattaatcacaaatcaaacagaaacttaaacacttaaagattca 17780147  T
Q  348 tgtgtttacctcttgaagagcagaacctttgtag 381  Q
    ||||||||||||||||||||||||||||||||||    
T  17780148 tgtgtttacctcttgaagagcagaacctttgtag 17780181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 248 - 381
Target Start/End: Original strand, 19081350 - 19081482
Alignment:
Q  248 caaaaatttaatcctctttgcggaagaaatcccattaaaacggatcttaattaaatcattaatcacaaatcaaacagaaacttaaacactttaagattca 347  Q
    ||||| ||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  19081350 caaaattttaatcctctttgcggaagaaatcccatgaaa-cggatcttgattaaatcattaatcacaaatcaaacagaaacttaaacacttaaagattca 19081448  T
Q  348 tgtgtttacctcttgaagagcagaacctttgtag 381  Q
    ||||||||||||||||||||||||||||||||||    
T  19081449 tgtgtttacctcttgaagagcagaacctttgtag 19081482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 237 - 381
Target Start/End: Complemental strand, 18534969 - 18534826
Alignment:
Q  237 agggatttttccaaaaatttaatcctctttgcggaagaaatcccattaaaacggatcttaattaaatcattaatcacaaatcaaacagaaacttaaacac 336  Q
    ||||||||||| |||| ||||||||||||| | ||||||||| |||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||    
T  18534969 agggatttttc-aaaattttaatcctctttacagaagaaatctcattgaaacggatcttgattaaatcattaatcacaaatcaaatagaaacttaaacac 18534871  T
Q  337 tttaagattcatgtgtttacctcttgaagagcagaacctttgtag 381  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  18534870 tttaagattcatgtgtttacctcttgaagagcagaacctttgtag 18534826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 243 - 381
Target Start/End: Complemental strand, 13518136 - 13517998
Alignment:
Q  243 ttttccaaaaatttaatcctctttgcggaagaaatcccattaaaacggatcttaattaaatcattaatcacaaatcaaacagaaacttaaacactttaag 342  Q
    |||| ||||| |||| |||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||    
T  13518136 tttttcaaaattttattcctctttgcagaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaatcagaaacttaaacactttaag 13518037  T
Q  343 attcatgtgtttacctcttgaagagcagaacctttgtag 381  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  13518036 attcatgtgtttacctcttgaaaagcagaacctttgtag 13517998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 243 - 381
Target Start/End: Original strand, 16481338 - 16481476
Alignment:
Q  243 ttttccaaaaatttaatcctctttgcggaagaaatcccattaaaacggatcttaattaaatcattaatcacaaatcaaacagaaacttaaacactttaag 342  Q
    |||| ||||| || |||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||||| | ||||||||||||||||||    
T  16481338 tttttcaaaatttaaatcctctttacggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaataaaaacttaaacactttaag 16481437  T
Q  343 attcatgtgtttacctcttgaagagcagaacctttgtag 381  Q
    |||||||||||||||||||||||||||||||||||||||    
T  16481438 attcatgtgtttacctcttgaagagcagaacctttgtag 16481476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 256 - 381
Target Start/End: Original strand, 1646389 - 1646514
Alignment:
Q  256 taatcctctttgcggaagaaatcccattaaaacggatcttaattaaatcattaatcacaaatcaaacagaaacttaaacactttaagattcatgtgttta 355  Q
    |||||||||| |||||| |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  1646389 taatcctcttagcggaacaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaacagaaacttaaacactttaagattaatgtgttta 1646488  T
Q  356 cctcttgaagagcagaacctttgtag 381  Q
    ||||||||||||||||||||||||||    
T  1646489 cctcttgaagagcagaacctttgtag 1646514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 256 - 382
Target Start/End: Original strand, 32055308 - 32055434
Alignment:
Q  256 taatcctctttgcggaagaaatcccattaaaacggatcttaattaaatcattaatcacaaatcaaacagaaacttaaacactttaagattcatgtgttta 355  Q
    |||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||    
T  32055308 taatcctctttgcggaagaaattccattgaaacggatcttgattaaatcattaatcacaaatcaaatagaaattgaaacactttaagattcatgtgttta 32055407  T
Q  356 cctcttgaagagcagaacctttgtagt 382  Q
    |||||||||||||||||||||||||||    
T  32055408 cctcttgaagagcagaacctttgtagt 32055434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 256 - 381
Target Start/End: Original strand, 15341112 - 15341237
Alignment:
Q  256 taatcctctttgcggaagaaatcccattaaaacggatcttaattaaatcattaatcacaaatcaaacagaaacttaaacactttaagattcatgtgttta 355  Q
    |||||||||  |||||| |||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  15341112 taatcctctaagcggaacaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaatcagaaacttaaacactttaagattcatgtgttta 15341211  T
Q  356 cctcttgaagagcagaacctttgtag 381  Q
    ||||||||||||||||||||||||||    
T  15341212 cctcttgaagagcagaacctttgtag 15341237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 243 - 381
Target Start/End: Complemental strand, 18538322 - 18538184
Alignment:
Q  243 ttttccaaaaatttaatcctctttgcggaagaaatcccattaaaacggatcttaattaaatcattaatcacaaatcaaacagaaacttaaacactttaag 342  Q
    |||| ||||| ||||||||||||| | ||||||||| |||| ||||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||||    
T  18538322 tttttcaaaattttaatcctctttacagaagaaatctcattgaaacggatcttgattaaatcattaatcacaaattaaatagaaacttaaacactttaag 18538223  T
Q  343 attcatgtgtttacctcttgaagagcagaacctttgtag 381  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  18538222 attcatgtgtttatctcttgaagagcagaacctttgtag 18538184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 256 - 381
Target Start/End: Original strand, 15356479 - 15356604
Alignment:
Q  256 taatcctctttgcggaagaaatcccattaaaacggatcttaattaaatcattaatcacaaatcaaacagaaacttaaacactttaagattcatgtgttta 355  Q
    |||||||||  |||||| ||||| |||| ||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  15356479 taatcctctaagcggaacaaatctcattgaaacggatcttgattaaatcattaatcacaaatcaatcagaaacttaaacactttaagattcatgtgttta 15356578  T
Q  356 cctcttgaagagcagaacctttgtag 381  Q
    ||||||||||||||||||||||||||    
T  15356579 cctcttgaagagcagaacctttgtag 15356604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 256 - 380
Target Start/End: Original strand, 23014236 - 23014360
Alignment:
Q  256 taatcctctttgcggaagaaatcccattaaaacggatcttaattaaatcattaatcacaaatcaaacagaaacttaaacactttaagattcatgtgttta 355  Q
    |||||||||| |||||| || ||||||| ||||  ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23014236 taatcctcttagcggaacaattcccattgaaacatatcttgattaaatcattaatcacaaatcaaacagaaacttaaacactttaagattcatgtgttta 23014335  T
Q  356 cctcttgaagagcagaacctttgta 380  Q
    ||||||||||| |||||||||||||    
T  23014336 cctcttgaagaacagaacctttgta 23014360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 243 - 381
Target Start/End: Complemental strand, 16201546 - 16201408
Alignment:
Q  243 ttttccaaaaatttaatcctctttgcggaagaaatcccattaaaacggatcttaattaaatcattaatcacaaatcaaacagaaacttaaacactttaag 342  Q
    |||| ||||| |||||||||||| ||| |||||||||||| |||||| ||||| |||||||||||| |||||||||||||| ||||||||||| ||||||    
T  16201546 tttttcaaaattttaatcctcttagcgaaagaaatcccatgaaaacgaatcttgattaaatcattactcacaaatcaaacaaaaacttaaacattttaag 16201447  T
Q  343 attcatgtgtttacctcttgaagagcagaacctttgtag 381  Q
    | | ||||||||||||| | ||||| |||||||||||||    
T  16201446 agtaatgtgtttacctcctaaagagtagaacctttgtag 16201408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 243 - 321
Target Start/End: Complemental strand, 12564473 - 12564395
Alignment:
Q  243 ttttccaaaaatttaatcctctttgcggaagaaatcccattaaaacggatcttaattaaatcattaatcacaaatcaaa 321  Q
    |||| ||||| ||||||||||||| |||||||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  12564473 tttttcaaaattttaatcctctttacggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaa 12564395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 289 - 336
Target Start/End: Original strand, 17196702 - 17196749
Alignment:
Q  289 ggatcttaattaaatcattaatcacaaatcaaacagaaacttaaacac 336  Q
    ||||||| ||||||||||||||||||||||||||| ||||||||||||    
T  17196702 ggatcttgattaaatcattaatcacaaatcaaacaaaaacttaaacac 17196749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 327 - 381
Target Start/End: Complemental strand, 25801436 - 25801382
Alignment:
Q  327 acttaaacactttaagattcatgtgtttacctcttgaagagcagaacctttgtag 381  Q
    ||||||||| || |||||||||||||||||||||||||| ||| |||||||||||    
T  25801436 acttaaacatttaaagattcatgtgtttacctcttgaagcgcataacctttgtag 25801382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 286 - 333
Target Start/End: Original strand, 6288241 - 6288288
Alignment:
Q  286 aacggatcttaattaaatcattaatcacaaatcaaacagaaacttaaa 333  Q
    |||||||||| ||||||||||||||||||||| |||||  ||||||||    
T  6288241 aacggatcttgattaaatcattaatcacaaattaaacaacaacttaaa 6288288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0657 (Bit Score: 119; Significance: 1e-60; HSPs: 1)
Name: scaffold0657
Description:

Target: scaffold0657; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 243 - 381
Target Start/End: Complemental strand, 4044 - 3906
Alignment:
Q  243 ttttccaaaaatttaatcctctttgcggaagaaatcccattaaaacggatcttaattaaatcattaatcacaaatcaaacagaaacttaaacactttaag 342  Q
    |||| ||||| ||||||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  4044 tttttcaaaattttaatcctctttacggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaacagaaacttaaacactttaag 3945  T
Q  343 attcatgtgtttacctcttgaagagcagaacctttgtag 381  Q
    |||||||||||||||||||||||||||||||||||||||    
T  3944 attcatgtgtttacctcttgaagagcagaacctttgtag 3906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 119; Significance: 1e-60; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 243 - 381
Target Start/End: Original strand, 27130277 - 27130415
Alignment:
Q  243 ttttccaaaaatttaatcctctttgcggaagaaatcccattaaaacggatcttaattaaatcattaatcacaaatcaaacagaaacttaaacactttaag 342  Q
    |||| ||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  27130277 tttttcaaaattttaatcctctttgcggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaacagaaacttaaacactttaag 27130376  T
Q  343 attcatgtgtttacctcttgaagagcagaacctttgtag 381  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  27130377 attcatgtgattacctcttgaagagcagaacctttgtag 27130415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 237 - 381
Target Start/End: Original strand, 18531388 - 18531531
Alignment:
Q  237 agggatttttccaaaaatttaatcctctttgcggaagaaatcccattaaaacggatcttaattaaatcattaatcacaaatcaaacagaaacttaaacac 336  Q
    ||||||||||| |||| |||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  18531388 agggatttttc-aaaattttaatcctctttgcggaagaaatcccaatgaaacggatcttgattaaatcattaatcacaaatcaaacagaaacttaaacac 18531486  T
Q  337 tttaagattcatgtgtttacctcttgaagagcagaacctttgtag 381  Q
    ||||||||||||||||||||||||||||||| |||||||||||||    
T  18531487 tttaagattcatgtgtttacctcttgaagagtagaacctttgtag 18531531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 243 - 381
Target Start/End: Complemental strand, 18253357 - 18253219
Alignment:
Q  243 ttttccaaaaatttaatcctctttgcggaagaaatcccattaaaacggatcttaattaaatcattaatcacaaatcaaacagaaacttaaacactttaag 342  Q
    |||| ||||| ||||||||||||||| |||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||    
T  18253357 tttttcaaaattttaatcctctttgcagaagaaatcccattgaaacggatcttgattaaattattaatcacaaatcaaacagaaacttaaacactttaag 18253258  T
Q  343 attcatgtgtttacctcttgaagagcagaacctttgtag 381  Q
    |||||||||||||||||||||||||||||||||||||||    
T  18253257 attcatgtgtttacctcttgaagagcagaacctttgtag 18253219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 243 - 381
Target Start/End: Original strand, 27309433 - 27309571
Alignment:
Q  243 ttttccaaaaatttaatcctctttgcggaagaaatcccattaaaacggatcttaattaaatcattaatcacaaatcaaacagaaacttaaacactttaag 342  Q
    |||| ||||| |||||||||||||||||||||||||||||| ||||  || || ||||||||||||||||||||||||||||||||||||||||||||||    
T  27309433 tttttcaaaattttaatcctctttgcggaagaaatcccattgaaacaaatattgattaaatcattaatcacaaatcaaacagaaacttaaacactttaag 27309532  T
Q  343 attcatgtgtttacctcttgaagagcagaacctttgtag 381  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  27309533 attcatgtgtttacctcttgaagagcaaaacctttgtag 27309571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 256 - 381
Target Start/End: Original strand, 16357926 - 16358051
Alignment:
Q  256 taatcctctttgcggaagaaatcccattaaaacggatcttaattaaatcattaatcacaaatcaaacagaaacttaaacactttaagattcatgtgttta 355  Q
    |||||||||| |||||| ||||| |||| ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  16357926 taatcctcttagcggaacaaatctcattgaaacggatcttgattaaatcattaatcacaaatcaaacagaaatttaaacactttaagattcatgtgttta 16358025  T
Q  356 cctcttgaagagcagaacctttgtag 381  Q
    ||||||||||||||||||||||||||    
T  16358026 cctcttgaagagcagaacctttgtag 16358051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 248 - 381
Target Start/End: Original strand, 21169309 - 21169427
Alignment:
Q  248 caaaaatttaatcctctttgcggaagaaatcccattaaaacggatcttaattaaatcattaatcacaaatcaaacagaaacttaaacactttaagattca 347  Q
    ||||| ||| |||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||| ||               ||    
T  21169309 caaaattttgatcctctttgcggaagaaatcccattgaaaaggatcttgattaaatcattaatcacaaatcaaacagaaattt---------------ca 21169393  T
Q  348 tgtgtttacctcttgaagagcagaacctttgtag 381  Q
    ||||||||||||||||||||||||||||||||||    
T  21169394 tgtgtttacctcttgaagagcagaacctttgtag 21169427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 248 - 381
Target Start/End: Original strand, 22640732 - 22640869
Alignment:
Q  248 caaaaatttaatcctctttgcggaagaaatcccattaaaacggatcttaattaaatcattaatcacaaatcaaacagaa-----acttaaacactttaag 342  Q
    ||||| ||||||| |||| |||||| |||||||||||||| ||||||| |||||||||||||||| |||| || || ||     ||||||||||||||||    
T  22640732 caaaattttaatc-tcttagcggaacaaatcccattaaaatggatcttgattaaatcattaatcataaattaatcaaaacacatacttaaacactttaag 22640830  T
Q  343 attcatgtgtttacctcttgaagagcagaacctttgtag 381  Q
      |||||||||||||||||||||  ||||||||||||||    
T  22640831 gatcatgtgtttacctcttgaagcacagaacctttgtag 22640869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 342 - 381
Target Start/End: Original strand, 9075856 - 9075895
Alignment:
Q  342 gattcatgtgtttacctcttgaagagcagaacctttgtag 381  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  9075856 gattcatgtgtttacctcttgaagagcagaatctttgtag 9075895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 256 - 321
Target Start/End: Original strand, 9075786 - 9075851
Alignment:
Q  256 taatcctctttgcggaagaaatcccattaaaacggatcttaattaaatcattaatcacaaatcaaa 321  Q
    |||||||||| |||||| ||||| |||| |||||| |||| ||||||  |||||||||||||||||    
T  9075786 taatcctcttagcggaacaaatctcattgaaacgggtcttgattaaagaattaatcacaaatcaaa 9075851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0234 (Bit Score: 117; Significance: 2e-59; HSPs: 2)
Name: scaffold0234
Description:

Target: scaffold0234; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 237 - 381
Target Start/End: Original strand, 10086 - 10230
Alignment:
Q  237 agggatttttccaaaaatttaatcctctttgcggaagaaatcccattaaaacggatcttaattaaatcattaatcacaaatcaaacagaaacttaaacac 336  Q
    |||| ||||| ||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||    
T  10086 aggggttttttcaaaattttaatcctctttgcggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaatagaaacttaaacac 10185  T
Q  337 tttaagattcatgtgtttacctcttgaagagcagaacctttgtag 381  Q
    ||||||||||||||||||||||||||| |||||||||||||||||    
T  10186 tttaagattcatgtgtttacctcttgacgagcagaacctttgtag 10230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0234; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 237 - 381
Target Start/End: Original strand, 1193 - 1337
Alignment:
Q  237 agggatttttccaaaaatttaatcctctttgcggaagaaatcccattaaaacggatcttaattaaatcattaatcacaaatcaaacagaaacttaaacac 336  Q
    |||| ||||| ||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||  ||||||||||||||    
T  1193 aggggttttttcaaaattttaatcctctttgcggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaattagaaacttaaacac 1292  T
Q  337 tttaagattcatgtgtttacctcttgaagagcagaacctttgtag 381  Q
    ||||||||||||||||||||||||||| |||||||||||||||||    
T  1293 tttaagattcatgtgtttacctcttgacgagcagaacctttgtag 1337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 117; Significance: 2e-59; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 249 - 381
Target Start/End: Original strand, 5082 - 5214
Alignment:
Q  249 aaaaatttaatcctctttgcggaagaaatcccattaaaacggatcttaattaaatcattaatcacaaatcaaacagaaacttaaacactttaagattcat 348  Q
    |||| |||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5082 aaaattttaatcctctttgcggaagaaatcccaatgaaacggatcttgattaaatcattaatcacaaatcaaacagaaacttaaacactttaagattcat 5181  T
Q  349 gtgtttacctcttgaagagcagaacctttgtag 381  Q
    |||||||||||||||||||||||||||||||||    
T  5182 gtgtttacctcttgaagagcagaacctttgtag 5214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 117; Significance: 2e-59; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 242 - 382
Target Start/End: Original strand, 11541859 - 11541999
Alignment:
Q  242 tttttccaaaaatttaatcctctttgcggaagaaatcccattaaaacggatcttaattaaatcattaatcacaaatcaaacagaaacttaaacactttaa 341  Q
    ||||| ||||| ||||||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||    
T  11541859 ttttttcaaaattttaatcctctttacggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaatagaaacttaaacactttaa 11541958  T
Q  342 gattcatgtgtttacctcttgaagagcagaacctttgtagt 382  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  11541959 gattcatgtgtttacctcttgaagagcagaacctttgtagt 11541999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 243 - 381
Target Start/End: Original strand, 2652868 - 2653006
Alignment:
Q  243 ttttccaaaaatttaatcctctttgcggaagaaatcccattaaaacggatcttaattaaatcattaatcacaaatcaaacagaaacttaaacactttaag 342  Q
    |||| ||||| ||||||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||    
T  2652868 tttttcaaaattttaatcctctttacggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaatagaaacttaaacactttaag 2652967  T
Q  343 attcatgtgtttacctcttgaagagcagaacctttgtag 381  Q
    |||||||||||||||||||||||||||||||||||||||    
T  2652968 attcatgtgtttacctcttgaagagcagaacctttgtag 2653006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 243 - 381
Target Start/End: Complemental strand, 12752186 - 12752048
Alignment:
Q  243 ttttccaaaaatttaatcctctttgcggaagaaatcccattaaaacggatcttaattaaatcattaatcacaaatcaaacagaaacttaaacactttaag 342  Q
    |||| ||||| ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||    
T  12752186 tttttcaaaattttaatcctctttacggaagaaatcccattgaaacggatcttaattaaatcattaatcaaaaatcaaaaagaaacttaaacactttaag 12752087  T
Q  343 attcatgtgtttacctcttgaagagcagaacctttgtag 381  Q
    |||||||||||||||||||||||||||||||||||||||    
T  12752086 attcatgtgtttacctcttgaagagcagaacctttgtag 12752048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 237 - 382
Target Start/End: Original strand, 11534936 - 11535081
Alignment:
Q  237 agggatttttccaaaaatttaatcctctttgcggaagaaatcccattaaaacggatcttaattaaatcattaatcacaaatcaaacagaaacttaaacac 336  Q
    |||| ||||| ||||| ||||||||||||| |||||||||||||||| ||||||||||| |||||||||||||||| |||||||| ||||||||||||||    
T  11534936 aggggttttttcaaaattttaatcctctttacggaagaaatcccattgaaacggatcttgattaaatcattaatcataaatcaaatagaaacttaaacac 11535035  T
Q  337 tttaagattcatgtgtttacctcttgaagagcagaacctttgtagt 382  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  11535036 tttaagattcatgtgtttacctcttgaagagcagaacctttgtagt 11535081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 248 - 381
Target Start/End: Complemental strand, 29329110 - 29328977
Alignment:
Q  248 caaaaatttaatcctctttgcggaagaaatcccattaaaacggatcttaattaaatcattaatcacaaatcaaacagaaacttaaacactttaagattca 347  Q
    ||||| ||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  29329110 caaaattttaatcctctttgcagaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaacagaaacttaaacattttaagattca 29329011  T
Q  348 tgtgtttacctcttgaagagcagaacctttgtag 381  Q
    ||||||||||||||||||||||||||||||||||    
T  29329010 tgtgtttacctcttgaagagcagaacctttgtag 29328977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 243 - 381
Target Start/End: Complemental strand, 15153795 - 15153656
Alignment:
Q  243 ttttccaaaaatttaatcctctttgcggaagaaatcccattaaaacggatcttaattaaatcattaatcacaaatcaaacagaaacttaaacacttt-aa 341  Q
    |||| ||||| |||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||||||||||||| ||||||||||| ||    
T  15153795 tttttcaaaattttaatcctctttgcggaagaaatcccattgaaacggatcttgattaaatcattactcacaaatcaaacagaaatttaaacactttaaa 15153696  T
Q  342 gattcatgtgtttacctcttgaagagcagaacctttgtag 381  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  15153695 gattcatgtgtttacctcttgaagagcagaacctttgtag 15153656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 237 - 381
Target Start/End: Complemental strand, 12739873 - 12739731
Alignment:
Q  237 agggatttttccaaaaatttaatcctctttgcggaagaaatcccattaaaacggatcttaattaaatcattaatcacaaatcaaacagaaacttaaacac 336  Q
    |||| ||||| | ||| |||||| ||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||    
T  12739873 aggggttttttcgaaattttaattctctttgcggaagaaatcctattgaaacggatcttgattaaatcattaatcacaaatcaaatagaaacttaaacac 12739774  T
Q  337 tttaagattcatgtgtttacctcttgaagagcagaacctttgtag 381  Q
    ||||||||||  |||||||||||||||||||||||||||||||||    
T  12739773 tttaagattc--gtgtttacctcttgaagagcagaacctttgtag 12739731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 249 - 382
Target Start/End: Complemental strand, 9979151 - 9979016
Alignment:
Q  249 aaaaatttaatcctctttgcggaagaaatcccatt-aaaacggatcttaattaaatcattaatcacaaatcaaacagaaacttaaacactttaa-gattc 346  Q
    |||| |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| | ||||||| | ||||| |||||    
T  9979151 aaaattttaatcctctttgcggaagaaatcccattgaaaacggatcttgattaaatcattaatcacaaatcaaacacatacttaaataatttaaggattc 9979052  T
Q  347 atgtgtttacctcttgaagagcagaacctttgtagt 382  Q
    |||||||| |||||||||||||||||||||||||||    
T  9979051 atgtgttttcctcttgaagagcagaacctttgtagt 9979016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 243 - 382
Target Start/End: Original strand, 18256697 - 18256837
Alignment:
Q  243 ttttccaaaaatttaatcctctttgcggaagaaatcccattaaaacggatcttaattaaatcattaatcacaaatcaaacagaaacttaaacacttta-a 341  Q
    |||| |||||||||||||||||| |||||| |||||||||| ||||||||||| ||||||||||||||||||||||||||| | ||||||||| ||||      
T  18256697 tttttcaaaaatttaatcctcttagcggaacaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaacacatacttaaacaatttagg 18256796  T
Q  342 gattcatgtgtttacctcttgaagagcagaacctttgtagt 382  Q
    ||||||||||||| |||||||||||| ||||| ||||||||    
T  18256797 gattcatgtgtttgcctcttgaagagaagaacttttgtagt 18256837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 243 - 382
Target Start/End: Complemental strand, 18562365 - 18562221
Alignment:
Q  243 ttttccaaaaatttaatcctctttgcggaagaaatcccattaaaacggatcttaattaaatcattaatcacaaatcaaacagaaacttaaacactttaa- 341  Q
    |||| ||||| |||||| ||||||| |||||||||| |||| ||||||||||| ||||||||||||||||||||||||||| | |||||||||||||||     
T  18562365 tttttcaaaattttaatactctttgaggaagaaatctcattgaaacggatcttgattaaatcattaatcacaaatcaaacacatacttaaacactttaat 18562266  T
Q  342 ----gattcatgtgtttacctcttgaagagcagaacctttgtagt 382  Q
        ||||||| |||||||||||||||||||||||||||||||||    
T  18562265 taaggattcatttgtttacctcttgaagagcagaacctttgtagt 18562221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 249 - 347
Target Start/End: Original strand, 11557101 - 11557199
Alignment:
Q  249 aaaaatttaatcctctttgcggaagaaatcccattaaaacggatcttaattaaatcattaatcacaaatcaaacagaaacttaaacactttaagattca 347  Q
    |||| ||||| | ||||||||||||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11557101 aaaattttaaccgtctttgcggaagaaatctcattgaaacggatcttgattaaatcattaatcacaaatcaaacagaaacttaaacactttaagattca 11557199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 298 - 342
Target Start/End: Original strand, 22947653 - 22947697
Alignment:
Q  298 ttaaatcattaatcacaaatcaaacagaaacttaaacactttaag 342  Q
    |||||||||||||||||||||||||||| | |||||| |||||||    
T  22947653 ttaaatcattaatcacaaatcaaacagataattaaaccctttaag 22947697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 286 - 321
Target Start/End: Complemental strand, 7748248 - 7748213
Alignment:
Q  286 aacggatcttaattaaatcattaatcacaaatcaaa 321  Q
    |||||||||| |||||||||||||||||||||||||    
T  7748248 aacggatcttgattaaatcattaatcacaaatcaaa 7748213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 297 - 381
Target Start/End: Complemental strand, 30926370 - 30926284
Alignment:
Q  297 attaaatcattaatcacaaatcaaacagaaacttaaacac-tttaag-attcatgtgtttacctcttgaagagcagaacctttgtag 381  Q
    ||||||||||||||| ||||||||||| | | ||| |||| |||||| || |||||||||||||||| ||  ||| |||||||||||    
T  30926370 attaaatcattaatcgcaaatcaaacacatatttatacacttttaagcatccatgtgtttacctcttaaatcgcaaaacctttgtag 30926284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 116; Significance: 7e-59; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 243 - 382
Target Start/End: Complemental strand, 26540 - 26401
Alignment:
Q  243 ttttccaaaaatttaatcctctttgcggaagaaatcccattaaaacggatcttaattaaatcattaatcacaaatcaaacagaaacttaaacactttaag 342  Q
    |||| ||||| ||||||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||    
T  26540 tttttcaaaattttaatcctctttacggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaatagaaacttaaacactttaag 26441  T
Q  343 attcatgtgtttacctcttgaagagcagaacctttgtagt 382  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  26440 attcatgtgtttacctcttgaagagcagaacctttgtagt 26401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0433 (Bit Score: 115; Significance: 3e-58; HSPs: 1)
Name: scaffold0433
Description:

Target: scaffold0433; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 243 - 381
Target Start/End: Complemental strand, 8435 - 8297
Alignment:
Q  243 ttttccaaaaatttaatcctctttgcggaagaaatcccattaaaacggatcttaattaaatcattaatcacaaatcaaacagaaacttaaacactttaag 342  Q
    |||| ||||| |||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  8435 tttttcaaaattttaatcctctttgcggaagaaatcccattgaaacgaatcttgattaaatcattaaacacaaatcaaacagaaacttaaacactttaag 8336  T
Q  343 attcatgtgtttacctcttgaagagcagaacctttgtag 381  Q
    |||||||||||||||||||||||||||||||||||||||    
T  8335 attcatgtgtttacctcttgaagagcagaacctttgtag 8297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 112; Significance: 2e-56; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 254 - 381
Target Start/End: Original strand, 24694351 - 24694478
Alignment:
Q  254 tttaatcctctttgcggaagaaatcccattaaaacggatcttaattaaatcattaatcacaaatcaaacagaaacttaaacactttaagattcatgtgtt 353  Q
    ||||||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  24694351 tttaatcctctttacggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaatagaaacttaaacactttaagattcatgtgtt 24694450  T
Q  354 tacctcttgaagagcagaacctttgtag 381  Q
    ||||||||||||||||||||||||||||    
T  24694451 tacctcttgaagagcagaacctttgtag 24694478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 254 - 381
Target Start/End: Original strand, 24701120 - 24701247
Alignment:
Q  254 tttaatcctctttgcggaagaaatcccattaaaacggatcttaattaaatcattaatcacaaatcaaacagaaacttaaacactttaagattcatgtgtt 353  Q
    ||||||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  24701120 tttaatcctctttacggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaatagaaacttaaacactttaagattcatgtgtt 24701219  T
Q  354 tacctcttgaagagcagaacctttgtag 381  Q
    ||||||||||||||||||||||||||||    
T  24701220 tacctcttgaagagcagaacctttgtag 24701247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 256 - 381
Target Start/End: Original strand, 18565350 - 18565475
Alignment:
Q  256 taatcctctttgcggaagaaatcccattaaaacggatcttaattaaatcattaatcacaaatcaaacagaaacttaaacactttaagattcatgtgttta 355  Q
    |||||||||| |||||| |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18565350 taatcctcttagcggaataaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaacagaaacttaaacactttaagattcatgtgttta 18565449  T
Q  356 cctcttgaagagcagaacctttgtag 381  Q
    ||||||||||||||||||||||||||    
T  18565450 cctcttgaagagcagaacctttgtag 18565475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 254 - 364
Target Start/End: Original strand, 19713397 - 19713508
Alignment:
Q  254 tttaatcctctttgcggaagaaatcccattaaaacggatcttaattaaatcattaatcacaaatcaaacagaaacttaaacactttaa-gattcatgtgt 352  Q
    ||||||||||||||||||||||||| |||| ||||||||||| ||||||| ||||||||||||||||||| | ||||||||| ||||| |||||||||||    
T  19713397 tttaatcctctttgcggaagaaatctcattgaaacggatcttgattaaattattaatcacaaatcaaacacatacttaaacaatttaaggattcatgtgt 19713496  T
Q  353 ttacctcttgaa 364  Q
    ||||||||||||    
T  19713497 ttacctcttgaa 19713508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 250 - 365
Target Start/End: Original strand, 28718844 - 28718960
Alignment:
Q  250 aaaatttaatcctctttgcggaagaaatcccattaaaacggatcttaattaaatcattaatcacaaatcaaacagaaacttaaacactttaa-gattcat 348  Q
    |||||||||| ||||| || ||| ||||||| || ||||| ||||| |||||||||||||||||||||||||   |||||||||| |||||| | |||||    
T  28718844 aaaatttaatactcttggcagaacaaatcccgttgaaacgaatcttgattaaatcattaatcacaaatcaaaaccaaacttaaacgctttaagggttcat 28718943  T
Q  349 gtgtttacctcttgaag 365  Q
    |||||||||||||||||    
T  28718944 gtgtttacctcttgaag 28718960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 285 - 381
Target Start/End: Complemental strand, 39539817 - 39539718
Alignment:
Q  285 aaacggatcttaattaaatcattaatcacaaatc--aaacagaaacttaaacactttaa-gattcatgtgtttacctcttgaagagcagaacctttgtag 381  Q
    ||||||||||| ||||||| ||||||||||||||  || || | ||||||||||||||| ||||| || ||||| | ||||||| |||||||||||||||    
T  39539817 aaacggatcttgattaaataattaatcacaaatcataagcacatacttaaacactttaaggattcctgagtttatcccttgaagtgcagaacctttgtag 39539718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 323
Target Start/End: Original strand, 17297916 - 17297953
Alignment:
Q  286 aacggatcttaattaaatcattaatcacaaatcaaaca 323  Q
    ||||||| || |||||||||||||||||||||||||||    
T  17297916 aacggatattgattaaatcattaatcacaaatcaaaca 17297953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 323
Target Start/End: Original strand, 22546245 - 22546323
Alignment:
Q  243 ttttccaaaaatttaatcctctttgcggaagaaatcccattaaaacggatcttaattaaatcattaatcacaaatcaaaca 323  Q
    |||| ||||| |||||||||||| || ||| |||||||   | ||| |||||| ||||||| |||||||||||||||||||    
T  22546245 tttttcaaaattttaatcctcttagcagaataaatcccg--agaacagatcttgattaaattattaatcacaaatcaaaca 22546323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1199 (Bit Score: 111; Significance: 6e-56; HSPs: 1)
Name: scaffold1199
Description:

Target: scaffold1199; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 243 - 381
Target Start/End: Complemental strand, 452 - 314
Alignment:
Q  243 ttttccaaaaatttaatcctctttgcggaagaaatcccattaaaacggatcttaattaaatcattaatcacaaatcaaacagaaacttaaacactttaag 342  Q
    |||| ||||| ||||||||||||| | |||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||    
T  452 tttttcaaaattttaatcctcttttctgaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaatagaaacttaaacactttaag 353  T
Q  343 attcatgtgtttacctcttgaagagcagaacctttgtag 381  Q
    |||||||||||||||||||||||||||||||||||||||    
T  352 attcatgtgtttacctcttgaagagcagaacctttgtag 314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0220 (Bit Score: 111; Significance: 6e-56; HSPs: 1)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 243 - 381
Target Start/End: Complemental strand, 19640 - 19502
Alignment:
Q  243 ttttccaaaaatttaatcctctttgcggaagaaatcccattaaaacggatcttaattaaatcattaatcacaaatcaaacagaaacttaaacactttaag 342  Q
    |||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||    
T  19640 tttttcaaaaatttaatcctctttgcggaagaaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaatagaaacttaaacactttaag 19541  T
Q  343 attcatgtgtttacctcttgaagagcagaacctttgtag 381  Q
    |||||||||||||||| |||||||||| || ||||||||    
T  19540 attcatgtgtttaccttttgaagagcacaatctttgtag 19502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 111; Significance: 6e-56; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 243 - 381
Target Start/End: Complemental strand, 15327550 - 15327412
Alignment:
Q  243 ttttccaaaaatttaatcctctttgcggaagaaatcccattaaaacggatcttaattaaatcattaatcacaaatcaaacagaaacttaaacactttaag 342  Q
    |||| ||||| |||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||    
T  15327550 tttttcaaaattttaatcctctttgcggaagaaatcccattgaaacggatattgattaaatcattaatcacaaatcaaatagaaacttaaacactttaag 15327451  T
Q  343 attcatgtgtttacctcttgaagagcagaacctttgtag 381  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  15327450 attcatgtgtttacctcttgaagagctgaacctttgtag 15327412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 243 - 381
Target Start/End: Complemental strand, 15507919 - 15507781
Alignment:
Q  243 ttttccaaaaatttaatcctctttgcggaagaaatcccattaaaacggatcttaattaaatcattaatcacaaatcaaacagaaacttaaacactttaag 342  Q
    |||| ||||| |||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||    
T  15507919 tttttcaaaattttaatcctctttgcggaagaaatcccattgaaacggatattgattaaatcattaatcacaaatcaaatagaaacttaaacactttaag 15507820  T
Q  343 attcatgtgtttacctcttgaagagcagaacctttgtag 381  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  15507819 attcatgtgtttacctcttgaagagctgaacctttgtag 15507781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 254 - 374
Target Start/End: Complemental strand, 28549350 - 28549230
Alignment:
Q  254 tttaatcctctttgcggaagaaatcccattaaaacggatcttaattaaatcattaatcacaaatcaaacagaaacttaaacactttaagattcatgtgtt 353  Q
    ||||||||||||||||||||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28549350 tttaatcctctttgcggaagaaatctcattgaaacggatcttgattaaatcattaatcacaaatcaaacagaaacttaaacactttaagattcatgtgtt 28549251  T
Q  354 tacctcttgaagagcagaacc 374  Q
    |||||||||||||||||||||    
T  28549250 tacctcttgaagagcagaacc 28549230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 243 - 381
Target Start/End: Complemental strand, 6095473 - 6095335
Alignment:
Q  243 ttttccaaaaatttaatcctctttgcggaagaaatcccattaaaacggatcttaattaaatcattaatcacaaatcaaacagaaacttaaacactttaag 342  Q
    |||| ||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||| ||||| ||||| ||||||||    
T  6095473 tttttcaaaattttaatcctctttgcggaagaaatcccattgaaacggatcttgattaaatcattaatcactaatcaaatagaaatttaaatactttaag 6095374  T
Q  343 attcatgtgtttacctcttgaagagcagaacctttgtag 381  Q
    |||||||||||||||||||||||||||||||||||||||    
T  6095373 attcatgtgtttacctcttgaagagcagaacctttgtag 6095335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 243 - 381
Target Start/End: Complemental strand, 21941994 - 21941856
Alignment:
Q  243 ttttccaaaaatttaatcctctttgcggaagaaatcccattaaaacggatcttaattaaatcattaatcacaaatcaaacagaaacttaaacactttaag 342  Q
    |||| ||||| ||||||||||| ||||||| ||||| |||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||    
T  21941994 tttttcaaaattttaatcctctatgcggaaaaaatctcattgaaacggatcttgattaaatcattaatcacaaatcaaatagaaacttaaacactttaag 21941895  T
Q  343 attcatgtgtttacctcttgaagagcagaacctttgtag 381  Q
    |||||||||||||||||||||||||||||||||||||||    
T  21941894 attcatgtgtttacctcttgaagagcagaacctttgtag 21941856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 256 - 381
Target Start/End: Complemental strand, 22172799 - 22172674
Alignment:
Q  256 taatcctctttgcggaagaaatcccattaaaacggatcttaattaaatcattaatcacaaatcaaacagaaacttaaacactttaagattcatgtgttta 355  Q
    |||||| ||| |||||| |||||||||| ||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  22172799 taatccgcttagcggaacaaatcccattgaaacggatcttgattaaatcattaatcataaatcaaacagaaacttaaacactttaagattcatgtgttta 22172700  T
Q  356 cctcttgaagagcagaacctttgtag 381  Q
    ||||||||||||||||||||||||||    
T  22172699 cctcttgaagagcagaacctttgtag 22172674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 256 - 380
Target Start/End: Complemental strand, 24644263 - 24644138
Alignment:
Q  256 taatcctctttgcggaagaaatcccatt-aaaacggatcttaattaaatcattaatcacaaatcaaacagaaacttaaacactttaagattcatgtgttt 354  Q
    |||||||||| |||||| |||| ||||| |||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  24644263 taatcctcttagcggaacaaattccattgaaaacggatcttgattaaatcattaatcacaaatcaaatagaaacttaaacactttaagattcatgtgttt 24644164  T
Q  355 acctcttgaagagcagaacctttgta 380  Q
    ||||||||||||||||||||||||||    
T  24644163 acctcttgaagagcagaacctttgta 24644138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 248 - 381
Target Start/End: Original strand, 24795872 - 24796005
Alignment:
Q  248 caaaaatttaatcctctttgcggaagaaatcccatt-aaaacggatcttaattaaatcattaatcacaaatcaaacagaaac-ttaaacactttaagatt 345  Q
    ||||| |||||||||||| |||||| ||||  |||| ||||||||| || ||||||||||||||||||||||||||| |||| ||||||||||   ||||    
T  24795872 caaaattttaatcctcttagcggaacaaatttcattgaaaacggattttcattaaatcattaatcacaaatcaaacacaaactttaaacactt--ggatt 24795969  T
Q  346 catgtgtttacctcttgaagagcagaacctttgtag 381  Q
    ||||||||||| |||||||| ||| |||||||||||    
T  24795970 catgtgtttacgtcttgaagcgcataacctttgtag 24796005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 249 - 340
Target Start/End: Complemental strand, 29230680 - 29230589
Alignment:
Q  249 aaaaatttaatcctctttgcggaagaaatcccattaaaacggatcttaattaaatcattaatcacaaatcaaacagaaacttaaacacttta 340  Q
    |||| ||||||| |||| |||||| ||||| |||| |||| |||||| |||||||||| |||||||||||||||| ||||||||||| ||||    
T  29230680 aaaattttaatcatcttagcggaataaatctcattgaaacagatcttgattaaatcatcaatcacaaatcaaacacaaacttaaacatttta 29230589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 243 - 319
Target Start/End: Original strand, 27660718 - 27660795
Alignment:
Q  243 ttttccaaaaatttaatcctctttgcggaagaaatcccatt-aaaacggatcttaattaaatcattaatcacaaatca 319  Q
    |||| ||||| |||||||||||| ||||||||||||||||| |||| | ||||| ||||||||||| |||||||||||    
T  27660718 tttttcaaaattttaatcctcttagcggaagaaatcccattgaaaatgaatcttgattaaatcatttatcacaaatca 27660795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 297 - 382
Target Start/End: Complemental strand, 17089347 - 17089258
Alignment:
Q  297 attaaatcattaatcacaaat---caaacagaaacttaaacactttaa-gattcatgtgtttacctcttgaagagcagaacctttgtagt 382  Q
    ||||||||| |||||||| ||   |||||| | ||||||| | ||||| |||||||||||||||||||||||| ||| ||| ||||||||    
T  17089347 attaaatcaataatcacagattaacaaacacatacttaaatattttaaagattcatgtgtttacctcttgaagtgcataacatttgtagt 17089258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 323
Target Start/End: Original strand, 42147328 - 42147357
Alignment:
Q  294 ttaattaaatcattaatcacaaatcaaaca 323  Q
    ||||||||||||||||||||||||||||||    
T  42147328 ttaattaaatcattaatcacaaatcaaaca 42147357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0213 (Bit Score: 107; Significance: 2e-53; HSPs: 1)
Name: scaffold0213
Description:

Target: scaffold0213; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 243 - 381
Target Start/End: Complemental strand, 4567 - 4429
Alignment:
Q  243 ttttccaaaaatttaatcctctttgcggaagaaatcccattaaaacggatcttaattaaatcattaatcacaaatcaaacagaaacttaaacactttaag 342  Q
    |||| ||||| |||||||||||||   ||| |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  4567 tttttcaaaattttaatcctctttatagaataaatcccattgaaacggatcttgattaaatcattaatcacaaatcaaacagaaacttaaacactttaag 4468  T
Q  343 attcatgtgtttacctcttgaagagcagaacctttgtag 381  Q
    |||||||||||||||||||||||||||||||||||||||    
T  4467 attcatgtgtttacctcttgaagagcagaacctttgtag 4429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 106; Significance: 6e-53; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 256 - 381
Target Start/End: Original strand, 22790726 - 22790851
Alignment:
Q  256 taatcctctttgcggaagaaatcccattaaaacggatcttaattaaatcattaatcacaaatcaaacagaaacttaaacactttaagattcatgtgttta 355  Q
    |||||||||||||||||||||||||||| |||  |||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  22790726 taatcctctttgcggaagaaatcccattgaaattgatcttgattaaatcattaatcacaaatcaaacaaaaacttaaacactttaagattcatgtgttta 22790825  T
Q  356 cctcttgaagagcagaacctttgtag 381  Q
    ||||||||||||||||||||||||||    
T  22790826 cctcttgaagagcagaacctttgtag 22790851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 243 - 377
Target Start/End: Complemental strand, 18621164 - 18621029
Alignment:
Q  243 ttttccaaaaatttaatcctctttgcggaagaaatcccattaaaacggatcttaattaaatcattaatcacaaatcaaacagaaacttaaacactttaag 342  Q
    |||| ||||| ||||||||||||||||||| ||||| |||| ||||||||||| ||||||| ||||||||||||||||||| | | ||||||| ||||||    
T  18621164 tttttcaaaattttaatcctctttgcggaataaatctcattgaaacggatcttgattaaatgattaatcacaaatcaaacacatagttaaacaatttaag 18621065  T
Q  343 -attcatgtgtttacctcttgaagagcagaaccttt 377  Q
     |||||||||||||||||||||| |||| |||||||    
T  18621064 aattcatgtgtttacctcttgaaaagcataaccttt 18621029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 249 - 382
Target Start/End: Complemental strand, 41665089 - 41664953
Alignment:
Q  249 aaaaatttaatcctctttgcggaagaaatcccattaaaacggatcttaattaaatcattaatcacaaatcaaacagaaacttaaacactttaa-gattc- 346  Q
    |||| |||||||||||| ||| || ||||  |||||||| ||||||| ||||||||||||||||||||||||||| | ||||||||| ||||| |||||     
T  41665089 aaaattttaatcctcttagcgtaacaaatatcattaaaatggatcttgattaaatcattaatcacaaatcaaacacatacttaaacaatttaaggattca 41664990  T
Q  347 -atgtgtttacctcttgaagagcagaacctttgtagt 382  Q
     ||||||||||||||||||||||||||| ||||||||    
T  41664989 tatgtgtttacctcttgaagagcagaacatttgtagt 41664953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 325 - 381
Target Start/End: Complemental strand, 27353602 - 27353547
Alignment:
Q  325 aaacttaaacactttaagattcatgtgtttacctcttgaagagcagaacctttgtag 381  Q
    |||| |||||||||||||||| ||||||||||||||||||| |||||| ||||||||    
T  27353602 aaacataaacactttaagatt-atgtgtttacctcttgaagcgcagaatctttgtag 27353547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 290 - 365
Target Start/End: Complemental strand, 12299072 - 12298996
Alignment:
Q  290 gatcttaattaaatcattaatcacaaatcaaacagaaacttaaacactttaa-gattcatgtgtttacctcttgaag 365  Q
    |||||| |||| ||||||||||| ||||  || | | |||||||||||||||  ||||||||||||||| |||||||    
T  12299072 gatcttgattatatcattaatcataaatataatacatacttaaacactttaatcattcatgtgtttaccccttgaag 12298996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0705 (Bit Score: 98; Significance: 4e-48; HSPs: 1)
Name: scaffold0705
Description:

Target: scaffold0705; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 256 - 381
Target Start/End: Original strand, 7532 - 7657
Alignment:
Q  256 taatcctctttgcggaagaaatcccattaaaacggatcttaattaaatcattaatcacaaatcaaacagaaacttaaacactttaagattcatgtgttta 355  Q
    |||||||||  |||||| ||||| |||| ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  7532 taatcctctaagcggaacaaatcacattgaaacggatcttgattaaatcattaatcacaaatcaaaaagaaacttaaacactttaagattcatgtgttta 7631  T
Q  356 cctcttgaagagcagaacctttgtag 381  Q
    ||||||||||||||||||||||||||    
T  7632 cctcttgaagagcagaacctttgtag 7657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 84; Significance: 8e-40; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 243 - 381
Target Start/End: Original strand, 107127 - 107265
Alignment:
Q  243 ttttccaaaaatttaatcctctttgcggaagaaatcccattaaaacggatcttaattaaatcattaatcacaaatcaaacagaaacttaaacactttaa- 341  Q
    |||| ||||||||||||| |||| ||| || |||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||| |||||     
T  107127 tttttcaaaaatttaatc-tcttagcgaaacaaatcccattaaaacggatcttgattaaatcattaatcacaaatcaaacacatacttaaacaatttaag 107225  T
Q  342 gattcatgtgtttacctcttgaagagcagaacctttgtag 381  Q
    ||||||||||||||||||| |||||||| |||||||||||    
T  107226 gattcatgtgtttacctctggaagagcataacctttgtag 107265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 81; Significance: 5e-38; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 243 - 382
Target Start/End: Complemental strand, 6856 - 6716
Alignment:
Q  243 ttttccaaaaatttaatcctctttgcggaagaaatcccattaaaacggatcttaattaaatcattaatcacaaatcaaacagaaacttaaacactttaa- 341  Q
    |||| ||||| |||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||| ||||||||| | ||||||||| || ||     
T  6856 tttttcaaaattttaatcctctttgcggaagaaatcccattgaaatggatcttgattaaatcattaatcaccaatcaaacacatacttaaacaattaaag 6757  T
Q  342 gattcatgtgtttacctcttgaagagcagaacctttgtagt 382  Q
    |||||||||||||||| ||  ||||||||||||||||||||    
T  6756 gattcatgtgtttaccactcaaagagcagaacctttgtagt 6716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1303 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: scaffold1303
Description:

Target: scaffold1303; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 274 - 381
Target Start/End: Original strand, 892 - 999
Alignment:
Q  274 aaatcccattaaaacggatcttaattaaatcattaatcacaaatcaaacagaaacttaaacactttaagattcatgtgtttacctcttgaagagcagaac 373  Q
    |||||||||| ||| |||||||  |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||    
T  892 aaatcccattgaaatggatcttgcttaaatcattaatcacaaatcaaacaaaaacttaaacacttcaagattcatgtgtttacctcttgaagaacagaac 991  T
Q  374 ctttgtag 381  Q
    ||||||||    
T  992 ctttgtag 999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 254 - 382
Target Start/End: Complemental strand, 88028 - 87899
Alignment:
Q  254 tttaatcctctttgcggaagaaatcccattaaaacggatcttaattaaatcattaatcacaaatcaaacagaaacttaaacacttt-aagattcatgtgt 352  Q
    ||||||||||| ||||||||||||  |||| ||||||||||| ||||||| ||| ||||| ||||||||| | || |||||| ||| |||||||||| ||    
T  88028 tttaatcctctatgcggaagaaatttcattgaaacggatcttgattaaattatttatcactaatcaaacacatacataaacaatttaaagattcatgagt 87929  T
Q  353 ttacctcttgaagagcagaacctttgtagt 382  Q
    ||||||||||||||||||||||||||||||    
T  87928 ttacctcttgaagagcagaacctttgtagt 87899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 237 - 380
Target Start/End: Original strand, 229258 - 229404
Alignment:
Q  237 agggatttttccaaaaatttaatcctctttgcggaagaaatcccattaaaacggatcttaattaaatcatta---atcacaaatcaaacagaaacttaaa 333  Q
    |||| ||||||||||  ||||||||||||||||||||||||  |||| ||||| ||||| ||||||| ||||   ||||||||||||||| | |||||||    
T  229258 agggttttttccaaat-tttaatcctctttgcggaagaaatttcattgaaacgaatcttgattaaattattattaatcacaaatcaaacacatacttaaa 229356  T
Q  334 cactttaag-attcatgtgtttacctcttgaagagcagaacctttgta 380  Q
    || |||||| |||||||||||||||||| |||||||||||||||||||    
T  229357 caatttaaggattcatgtgtttacctctagaagagcagaacctttgta 229404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0502 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: scaffold0502
Description:

Target: scaffold0502; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 242 - 381
Target Start/End: Complemental strand, 374 - 235
Alignment:
Q  242 tttttccaaaaatttaatcctctttgcggaagaaatcccattaaaacggatcttaattaaatcattaatcacaaatcaaacagaaacttaaacactttaa 341  Q
    ||||| ||||| |||||||||||  || ||| |||||||||| || |||||||| |||||||||||||||| |||||||| |    ||||||||||||||    
T  374 ttttttcaaaattttaatcctctcagcagaataaatcccattgaatcggatcttgattaaatcattaatcaaaaatcaaaaatgttcttaaacactttaa 275  T
Q  342 gattcatgtgtttacctcttgaagagcagaacctttgtag 381  Q
     ||||||||||||| ||||||||||| |||||||||||||    
T  274 aattcatgtgtttatctcttgaagagtagaacctttgtag 235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University