View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11835_low_45 (Length: 398)
Name: NF11835_low_45
Description: NF11835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11835_low_45 |
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Alignment Details
Target: chr2 (Bit Score: 160; Significance: 4e-85; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 15 - 202
Target Start/End: Original strand, 14747675 - 14747861
Alignment:
| Q |
15 |
aaggagacaaacttgaattttaaccaccaaaaaacttagaagtttaacctccaatcatagtgcttatcatggttagttttgtatcttcatttttgtttct |
114 |
Q |
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| T |
14747675 |
aaggagagaaacttcaattttaaccatcaaaaaact-agaagtttaacctccaatcattgtgcttatcatggttagttttgtatcttcatttttgtttct |
14747773 |
T |
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| Q |
115 |
taaatcgtactcaatcaattttatgcatcttatttctttcgttcaatgttctacatcttcttaaaactctcaaactaacttcacgagt |
202 |
Q |
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| T |
14747774 |
taaatcgtactcaatcaattttatgcatcttatttctttcgttgaatgttctacatcttcttaaaactctcaaactaacttcacgagt |
14747861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 217 - 383
Target Start/End: Original strand, 14748266 - 14748432
Alignment:
| Q |
217 |
cacatttgttgaacgacctaggagataattggtcttgtaaatgtcaagtattgtaaggctttgacaatagtgcgatattcaattgggtcatgatatggat |
316 |
Q |
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| T |
14748266 |
cacatttgttgaacgacctaggagatacttagtcttgtaaatgtcaagtattgtaaggctttaacaatagtgcgatattcaattgggtcatgatatggat |
14748365 |
T |
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| Q |
317 |
tacttgaagcaccactgagtttaacttgtgtgtcaaccgctgtagaagattgtttgcaagaagacat |
383 |
Q |
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| T |
14748366 |
tacttgaagcaccactgagtttaacttgtgtgtcaaccggtgtagaagatggtttgcaagaagacat |
14748432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 81 - 179
Target Start/End: Original strand, 14740329 - 14740424
Alignment:
| Q |
81 |
tcatggttagttttgtatcttcatttttgtttcttaaatcgtactcaatcaattttatgca---tcttatttctttcgttcaatgttctacatcttctta |
177 |
Q |
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| T |
14740329 |
tcatggttagttttgtatcttgatttttgtttctttaatcata------caattttatgcatcttcttaattctttctttcaatgttctatatcttctta |
14740422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 199
Target Start/End: Original strand, 14748059 - 14748099
Alignment:
| Q |
159 |
aatgttctacatcttcttaaaactctcaaactaacttcacg |
199 |
Q |
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| T |
14748059 |
aatgttctacatcttcttaagaccctcaaactaacttcacg |
14748099 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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