View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11835_low_46 (Length: 398)
Name: NF11835_low_46
Description: NF11835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11835_low_46 |
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Alignment Details
Target: chr2 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 382
Target Start/End: Complemental strand, 27146634 - 27146251
Alignment:
| Q |
1 |
tcaaagttcaacaactcagcatcactgatgagctagtaagttgtcttacaaaaccacactctaaatctcgtcatcaatacttacaaaacaaatttggcgt |
100 |
Q |
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| T |
27146634 |
tcaaagtttaacaactcagcatcactgatgagctagtaagttgtcttacaaaaccacactctaaatctcgtcatcaatacttacaaaacaagtttggcgt |
27146535 |
T |
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| Q |
101 |
ttccaataacactccaatctagtagagcatgttagacaatgcattcattaccaatcaattagcaaataaaaatgatttcattcgttaactatcattagca |
200 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
27146534 |
ttccaataacactccaatc--gtagagcatgttagacaatgcattcattaccaatcaattagcaaataaaaatgatttcattcattaactatcattagca |
27146437 |
T |
|
| Q |
201 |
aataaaatggttgcattcattagcaatcacttcaacattcattattggttgtatacctcttgtaaatca----aatgtaacatattgagtgatacatttc |
296 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |
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| T |
27146436 |
aataaaatggttgcattcattagcaatcacttcaacattcattattggttgtatagctcttgtaaatcaaattaatgtaacatattgagtgatacatttc |
27146337 |
T |
|
| Q |
297 |
ttacggttacagcttgttcgtgtcaaatcatgtaacaaatctgggtggtctagtttttcattgttgtatttgtatgtatgtgtaat |
382 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27146336 |
ttacagttacagcttgttcgtgtcaaatcatgtaacaaatctgggtggtctagtttttcattgttgtatttgtatgtatgtgtaat |
27146251 |
T |
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