View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11835_low_47 (Length: 397)
Name: NF11835_low_47
Description: NF11835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11835_low_47 |
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Alignment Details
Target: chr4 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 18 - 387
Target Start/End: Original strand, 18892802 - 18893171
Alignment:
| Q |
18 |
ctcttaacattgattaataacaaatatgctagttcattgccaacttatacctaaaagttatatattttagattggttaattcattgtatcaagttttgtg |
117 |
Q |
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| T |
18892802 |
ctcttaacattgattaataacaaatatgctagttcattgccaacttatacctaaaagttatatattttagattggttaattcattgtatcaagttttgtg |
18892901 |
T |
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| Q |
118 |
tgattatttagttagtaattaaattgaaattttaacacatgtcatggtttgctgccacacgtggagacatcttaatattagcaattggatgggtaaagca |
217 |
Q |
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| T |
18892902 |
tgattatttagttagtaattaaattgaaattttaacacatgtcatagtttgctgccacacgtggagacatcttaatattagcatttggatgggtaaagca |
18893001 |
T |
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| Q |
218 |
caaaaatatggtcaagttgcttggatatggttctattacctatcatattttagctttgaaggaaacacatcatgatcacaatgtgttaagagataagtca |
317 |
Q |
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| T |
18893002 |
caaaaatatggtcaagttgcttggatatggttctattacctatcatattttagctttgaaggaaacacatcatgatcacaatgtgttaagagataagtca |
18893101 |
T |
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| Q |
318 |
tgtatcatcataggtgtgggggatatgaagactgaatggtaaagatttaatttaatccactatccctttg |
387 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
18893102 |
tgtatcatcataggtgtgggggatatgaagactgaatggtaaagatttaatttaatccactatccttttg |
18893171 |
T |
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