View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11835_low_48 (Length: 396)
Name: NF11835_low_48
Description: NF11835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11835_low_48 |
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Alignment Details
Target: chr1 (Bit Score: 355; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 21 - 379
Target Start/End: Complemental strand, 36916 - 36558
Alignment:
| Q |
21 |
aaaatattgtgagggaaacaagattcaacataaattgaagctatgcttttataacttacttcctcctttaagaatgttatataactttgcctcatatagt |
120 |
Q |
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| T |
36916 |
aaaatattgtgagggaaacaagattcaacataaattgaagctatgcttttataacttacttcctcctttaagaatgttatataactttgcctcatatagt |
36817 |
T |
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| Q |
121 |
agctgtggttgttgagttttcttcttctcctattacacaagaatatgtctattataaaccatcacaaagttgaggactttttacacgttcagtgaccaaa |
220 |
Q |
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| T |
36816 |
agctgtggttgttgagttttcttcttctcctattacacaagaatatgtctattataaaccatcacaaagttgaggactttttacacgttcagtgaccaaa |
36717 |
T |
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| Q |
221 |
agatgtaaattaacaatcaaaatttaaacatgcatctaattgagaaatttgattcactacaaaaattgtaatacaagatatgatagtctttaagcttcat |
320 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36716 |
agatgtaaattaacaatcaaaatttaaacatgcatctaattgagaaatttgatccactacaaaaattgtaatacaagatatgatagtctttaagcttcat |
36617 |
T |
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| Q |
321 |
ccatccatctactacggaaaagataaaaacgatgtaatcaaatttaaggtctttaattt |
379 |
Q |
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| T |
36616 |
ccatccatctactacggaaaagataaaaacgatgtaatcaaatttaaggtctttaattt |
36558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 293 - 361
Target Start/End: Complemental strand, 39595881 - 39595813
Alignment:
| Q |
293 |
acaagatatgatagtctttaagcttcatccatccatctactacggaaaagataaaaacgatgtaatcaa |
361 |
Q |
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| T |
39595881 |
acaagatattatagtcttttaccttcatccatccatatactaccaaaaagctagaaatgatgtaatcaa |
39595813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 276 - 372
Target Start/End: Complemental strand, 37268049 - 37267953
Alignment:
| Q |
276 |
actacaaaaattgtaatacaagatatgatagtctttaagcttcatccatccatctactacggaaaagataaaaacgatgtaatcaaatttaaggtct |
372 |
Q |
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| T |
37268049 |
actaaaaaagttctaaaacaagatatgatagtcttttaccttcattcatctatctactacctaaaagtaaaaaacattgtaatcaaatttaatgtct |
37267953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 298 - 377
Target Start/End: Original strand, 10408238 - 10408317
Alignment:
| Q |
298 |
atatgatagtctttaagcttcatccatccatctactacggaaaagataaaaacgatgtaatcaaatttaaggtctttaat |
377 |
Q |
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| T |
10408238 |
atatgatagccgttcaccttcatcgatccatctactactaaaaagctaaaactgatgtaatcaaatttaatgtctttaat |
10408317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 282 - 373
Target Start/End: Original strand, 13085098 - 13085188
Alignment:
| Q |
282 |
aaaattgtaatacaagatatgatagtctttaagcttcatccatccatctactacggaaaagataaaaacgatgtaatcaaatttaaggtctt |
373 |
Q |
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| T |
13085098 |
aaaattctaaaacaaggtatgatagtttttaa-cttcattcttctatctaccaccgaaaagctaaaaatgatgtaatcaaatttaatgtctt |
13085188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 293 - 376
Target Start/End: Original strand, 43222529 - 43222614
Alignment:
| Q |
293 |
acaagatatgatagtctttaagcttcatccatccatctacta--cggaaaagataaaaacgatgtaatcaaatttaaggtctttaa |
376 |
Q |
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| T |
43222529 |
acaaaatattatagtttttcatcttcattcatccatctactataccgataagctaaaaatgatgtaatcaaatttaatgtctttaa |
43222614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 281 - 355
Target Start/End: Complemental strand, 43416953 - 43416879
Alignment:
| Q |
281 |
aaaaattgtaatacaagatatgatagtctttaagcttcatccatccatctactacggaaaagataaaaacgatgt |
355 |
Q |
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||||||| ||| ||||||||||||||||||| | |||| | |||| |||||||| |||||||||||| ||||| |
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| T |
43416953 |
aaaaattctaaaacaagatatgatagtctttcatcttcgttcatctatctactatcaaaaagataaaaatgatgt |
43416879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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