View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11835_low_54 (Length: 378)
Name: NF11835_low_54
Description: NF11835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11835_low_54 |
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Alignment Details
Target: chr4 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 19 - 359
Target Start/End: Original strand, 5974014 - 5974354
Alignment:
| Q |
19 |
cacagaaccgtaattaaactagaagagacatgtgtcatcttatctaaacgctcttgatttatttcgatcatatttacttaagtggcatctcttagcatgt |
118 |
Q |
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|||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |
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| T |
5974014 |
cacagaaccgtagttaaactagaagagacatatgtcatcttatctaaacgctcttgatttaattcgttcatatttacttaagtggcatctcttagcatgt |
5974113 |
T |
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| Q |
119 |
gcaatttatgtaatcaatgagtatttctnnnnnnnntaatgtaatcaatgagtaattaggaaattattgacattgtcctcacggtttaaactgttttaat |
218 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5974114 |
gcaatttatgtaatcaatgagtatttctaaaaaaaataatgtaatcaatgagtaattaggaaattattgacattgtcctcacggtttaaactgttttaat |
5974213 |
T |
|
| Q |
219 |
gcctcatttaggatccgttatggctgtctttttctttaatttcagtacgttataacttatcatttcttttacacaatattaacatcacttttttagcaaa |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5974214 |
gcctcatttaggatccgttatggctgtctttttctttaatttcagtacgttataacttatcatttcttttacacaatattaacatcacttttttagcaaa |
5974313 |
T |
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| Q |
319 |
agatcagtttagttaatttgacattaaatacgtgtggttag |
359 |
Q |
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| T |
5974314 |
agatcagtttagttaatttgacattaaatacgtgtggttag |
5974354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 74
Target Start/End: Original strand, 36994617 - 36994659
Alignment:
| Q |
32 |
ttaaactagaagagacatgtgtcatcttatctaaacgctcttg |
74 |
Q |
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| T |
36994617 |
ttaaactagaagagacatgtgccatcttatctaagcgctcttg |
36994659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 32 - 71
Target Start/End: Complemental strand, 23867448 - 23867409
Alignment:
| Q |
32 |
ttaaactagaagagacatgtgtcatcttatctaaacgctc |
71 |
Q |
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| T |
23867448 |
ttaaactagaagagacatgtgtcatctcagctaaacgctc |
23867409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 32 - 75
Target Start/End: Original strand, 21089359 - 21089402
Alignment:
| Q |
32 |
ttaaactagaagagacatgtgtcatcttatctaaacgctcttga |
75 |
Q |
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| T |
21089359 |
ttaaactagaagagacttgtgtcatctcatctaaacgttcttga |
21089402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 73
Target Start/End: Complemental strand, 36982379 - 36982338
Alignment:
| Q |
32 |
ttaaactagaagagacatgtgtcatcttatctaaacgctctt |
73 |
Q |
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|||||||||||||||| |||||||||| |||||||| ||||| |
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| T |
36982379 |
ttaaactagaagagacctgtgtcatctcatctaaactctctt |
36982338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 65
Target Start/End: Original strand, 3525970 - 3526003
Alignment:
| Q |
32 |
ttaaactagaagagacatgtgtcatcttatctaa |
65 |
Q |
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||||||||||||||||||||||||||| |||||| |
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| T |
3525970 |
ttaaactagaagagacatgtgtcatctcatctaa |
3526003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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