View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11835_low_55 (Length: 378)
Name: NF11835_low_55
Description: NF11835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11835_low_55 |
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Alignment Details
Target: chr5 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 364
Target Start/End: Complemental strand, 21055929 - 21055570
Alignment:
| Q |
1 |
tgccggcataaaaaattagatatataaagcagcaagaaataaaccagatacatnnnnnnncacccaatattgtgggactcctactctcacaggtctcaga |
100 |
Q |
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| T |
21055929 |
tgccggcataaaaaattagatatataaagcagcaagaaataaaccagatgcataaa----cacccaatattgtgggactcctactctcacaggtctcaga |
21055834 |
T |
|
| Q |
101 |
tacataatcagaaattgcaacatcaattcagaatgagagtccaaagtattttctgaattttaaaaatttcagtgacacctttaactagtaaaaatctcta |
200 |
Q |
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| T |
21055833 |
tgcataatcagcaattgcaacatcaattcagaatgagagtccaaagtattttctgaattttaaaaatttcagtgacacctttaaccagtaaaaatctcta |
21055734 |
T |
|
| Q |
201 |
tgcatgagataattccaccttttttggtgtatttttcaattctttactgtgagtagtaaaatgcctcattaaaatacttnnnnnnnngtctgtcttctaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
21055733 |
tgcatgagataattccaccttttttggtgtatttttcaatgctttactgtgagtagtaaaatgcctcattaaaatacttaaaaaaaagtctgtcttctaa |
21055634 |
T |
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| Q |
301 |
agcatcaaaaaggagcattttattagatacatcctttcaaaaagtatatatgtactttccctcc |
364 |
Q |
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| T |
21055633 |
agcatcaaaaaggagcattttattagatacatcctttcaaaaagtatatatgtactttccctcc |
21055570 |
T |
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Back To:
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Target: chr6 (Bit Score: 71; Significance: 4e-32; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 193 - 279
Target Start/End: Original strand, 26363614 - 26363700
Alignment:
| Q |
193 |
aatctctatgcatgagataattccaccttttttggtgtatttttcaattctttactgtgagtagtaaaatgcctcattaaaatactt |
279 |
Q |
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||||||||| |||| |||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
26363614 |
aatctctattcatgtgataattccaccttttttggtggatttttcaattctttattgtgagtagtaaaatgcctcattaaaatactt |
26363700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 193 - 279
Target Start/End: Original strand, 26366169 - 26366255
Alignment:
| Q |
193 |
aatctctatgcatgagataattccaccttttttggtgtatttttcaattctttactgtgagtagtaaaatgcctcattaaaatactt |
279 |
Q |
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|||||| ||||||| ||||||||||| ||||||||| || ||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
26366169 |
aatctccatgcatgtgataattccactctttttggtggatatttcaattctttattgtgagtagtaaaatgcctcattaaaatactt |
26366255 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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