View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11835_low_57 (Length: 376)
Name: NF11835_low_57
Description: NF11835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11835_low_57 |
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Alignment Details
Target: chr2 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 325
Target Start/End: Complemental strand, 14998369 - 14998045
Alignment:
| Q |
1 |
gagttcactctcctgaaatattggcataagttaatgtagctacagaaaaatattgcataggatggctgaaaccactgttatttctttaatttcaacctct |
100 |
Q |
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| T |
14998369 |
gagttcactctcctgaaatattggcataagttaatgtagctacagaaaaatattgcataggatggctgaaaccactgttatttctttaattgcaacctct |
14998270 |
T |
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| Q |
101 |
agaattgtacataagcaagtttcgttcatccaaaagaaaggaaagtattttcgaaaaacacaaattaccgccttagcaactttaggcaaaagatgcagcc |
200 |
Q |
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| T |
14998269 |
agaattgtacataagcaagtttcattcatccaaaagaaaggaaagtattttccaaaaacacaaattaccgccttagcaactttaggcaaaagatgcagcc |
14998170 |
T |
|
| Q |
201 |
atttcttctcaactttttccagcaaggtcttagccatcacatggacatcatggctttcatggttgtatttcattgcattatgaaaaatcagccttacgtc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
14998169 |
atttcttctcaactttttccagcaaggtcttagccatcacatggacatcatggctttcatggttgtatttcattgcattatgaaatatcagccttacgtc |
14998070 |
T |
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| Q |
301 |
agcatatatctccctcacgttctta |
325 |
Q |
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| T |
14998069 |
agcatatatctccctcacgttctta |
14998045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 322 - 366
Target Start/End: Original strand, 14998667 - 14998711
Alignment:
| Q |
322 |
cttagtctcgcaaagaatgattattttgttgaaccacctgatgat |
366 |
Q |
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| T |
14998667 |
cttagtcttgccaagaatgattattttcttgaaccacctgctgat |
14998711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 28 - 325
Target Start/End: Complemental strand, 29467164 - 29466866
Alignment:
| Q |
28 |
aagttaatgtagctacagaaaaatattgcataggatggctgaaaccactgttatttctttaatttcaacctctagaattgtacataagcaagtttcgttc |
127 |
Q |
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|||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||| ||| |
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| T |
29467164 |
aagttaatatagttacagaaaaatattgcataggatggctgaaaccactgttatttctataagtgcaacctctagaattgtacataagcaagtttcattc |
29467065 |
T |
|
| Q |
128 |
atccaaaagaaaggaaagtattttcgaaaaaca-caaattaccgccttagcaactttaggcaaaagatgcagccatttcttctcaactttttccagcaag |
226 |
Q |
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| T |
29467064 |
atcaaaaacaaaggaaagtatttggaaaaaaaaacaaattaccgccttagcaactttaggcaaaaaatgcagccattacttctcaaatttttccagcaag |
29466965 |
T |
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| Q |
227 |
gtcttagccatcacatggacatcatggctttcatggttgtatttcattgcattatgaaaaatcagccttacgtcagcatatatctccctcacgttctta |
325 |
Q |
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| T |
29466964 |
gtcttagccatcacatggacatcattcttttcatcattgtacttcattgcattcttaaaaatcagccttacatcagcatatatctccctcacgttctta |
29466866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 153 - 314
Target Start/End: Original strand, 32191951 - 32192111
Alignment:
| Q |
153 |
gaaaaacacaaattaccgccttagcaactttaggcaaaagatgcagccatttcttctcaactttttccagcaaggtcttagccatcacatggacatcatg |
252 |
Q |
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|||||||| |||| ||||||||||||||| |||| ||||| ||||| ||||| ||||||| ||||| | | | || || |||||||||||||||| || |
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| T |
32191951 |
gaaaaaca-aaataaccgccttagcaactgtaggtaaaaggtgcagtcatttattctcaaatttttgtaacgaagtttttgccatcacatggacataatt |
32192049 |
T |
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| Q |
253 |
gctttcatggttgtatttcattgcattatgaaaaatcagccttacgtcagcatatatctccc |
314 |
Q |
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| T |
32192050 |
tatttcattgttatacttcattgcattcttaaatatcagccttacatcaacatatatctccc |
32192111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 128 - 221
Target Start/End: Complemental strand, 32191598 - 32191506
Alignment:
| Q |
128 |
atccaaaagaaaggaaagtattttcgaaaaacacaaattaccgccttagcaactttaggcaaaagatgcagccatttcttctcaactttttcca |
221 |
Q |
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||||||||||||||||| || ||| | |||||| ||| || ||||| | |||||||||||| |||||||||| |||| ||||||| |||||||| |
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| T |
32191598 |
atccaaaagaaaggaaaataatttgggaaaacaaaaaatatcgcctaa-caactttaggcagaagatgcagctatttattctcaaatttttcca |
32191506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 28 - 71
Target Start/End: Complemental strand, 32191650 - 32191607
Alignment:
| Q |
28 |
aagttaatgtagctacagaaaaatattgcataggatggctgaaa |
71 |
Q |
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|||| ||||||||||||||||||||||||||| |||| |||||| |
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| T |
32191650 |
aagtcaatgtagctacagaaaaatattgcatacgatgactgaaa |
32191607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 195 - 279
Target Start/End: Complemental strand, 29872799 - 29872715
Alignment:
| Q |
195 |
gcagccatttcttctcaactttttccagcaaggtcttagccatcacatggacatcatggctttcatggttgtatttcattgcatt |
279 |
Q |
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|||||||||| | |||| |||||||| ||||||||| ||||| |||||||||||||| |||||| |||||| ||||| ||||| |
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| T |
29872799 |
gcagccatttatcttcaaatttttccatcaaggtctttgccattacatggacatcatgtttttcattgttgtacttcatggcatt |
29872715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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