View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11835_low_58 (Length: 374)
Name: NF11835_low_58
Description: NF11835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11835_low_58 |
 | |
|
| [»] chr5 (2 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 52 - 374
Target Start/End: Original strand, 2924906 - 2925228
Alignment:
| Q |
52 |
aacccttgatcatactttaaactattaaaaaagcataggcttaatctagtgttatcattcataaatacactatttaacatagaaacaaacacattaaatt |
151 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2924906 |
aacccttgatcatactttaaactattaaaaaagcataggcttaatctagtgttatcattcataaatacactatttaacatagaaacaaacacattaaatt |
2925005 |
T |
|
| Q |
152 |
tctcttatgtatcatgaagttacaaagttcacaaaacattccctacaaaaaatgcatcatcctttaacagaagtcttataagaacaagatatcaaaatat |
251 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |
|
|
| T |
2925006 |
tctcttatgcatcatgaagttacaaagttcacaaaacattccctacaaaaaatgcatcatcctttaacacaagtcttataagaacgagatatcaaaatat |
2925105 |
T |
|
| Q |
252 |
tcaccaaataactcagaattaaatacaataaaaggttcagaaaattcacctagtactctcttcatcaaattgcgccaatgaaacataactagaaccagaa |
351 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2925106 |
tcaccaaataactcagaattaaatacaataaaaggttcagaaaattcacctagtactctcttcatcaaattgcgccaatgaaacataactagaaccagaa |
2925205 |
T |
|
| Q |
352 |
acagcagaacgagaaccttctct |
374 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
2925206 |
acagcagaacgagaaccttctct |
2925228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 42 - 109
Target Start/End: Original strand, 2924797 - 2924873
Alignment:
| Q |
42 |
cctctcctacaacccttgatcatactttaaactat---------taaaaaagcataggcttaatctagtgttatcat |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |
|
|
| T |
2924797 |
cctctcctacaacccttgatcatactttaaactttaaaatagtttaaaaaagcataggcttaatctagtgttatcat |
2924873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University