View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11835_low_59 (Length: 373)
Name: NF11835_low_59
Description: NF11835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11835_low_59 |
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Alignment Details
Target: chr7 (Bit Score: 144; Significance: 1e-75; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 220 - 367
Target Start/End: Original strand, 23098971 - 23099118
Alignment:
| Q |
220 |
atgttgaaaaataatttatggtgtttaaggtgttgcactcaagtccaaccaaattgtctaatccttcccacaattaattcacctatttcttgttcctctt |
319 |
Q |
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| T |
23098971 |
atgttgaaaaataatttatggtgtttaaggtgttgcactcaagtccaaccaaattgtctaatccttcccacaattaattcacctatttcttgttcctctt |
23099070 |
T |
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| Q |
320 |
caaatttcttttctttaaccatccaaatattcaatcttttcatctctc |
367 |
Q |
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| T |
23099071 |
caaatttcttttctttaaccatccaaatattcaatcttttcctctctc |
23099118 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 16 - 100
Target Start/End: Original strand, 23098767 - 23098851
Alignment:
| Q |
16 |
atgtgtcccactctaacagtaataaaatgcattaaagatgaatgtgtatgcattcattatgatcatgacaagcaataggtgaatc |
100 |
Q |
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| T |
23098767 |
atgtgtcccactctaacagtaataaaatgcattaaagatgaatgtgtatgcattcattatgatcatgacaagcaataggtgaatc |
23098851 |
T |
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