View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11835_low_6 (Length: 647)
Name: NF11835_low_6
Description: NF11835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11835_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 236 - 617
Target Start/End: Complemental strand, 38826507 - 38826122
Alignment:
| Q |
236 |
ttttttgttgatttggcatgaaatctagtccaacggtaagttctatacttttgagtccnnnnnnnttgatttagaaaaggagagaccaatttcgtaaata |
335 |
Q |
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| T |
38826507 |
ttttttgttgatgtggcatgaaatctagtccaacagtaagttctatacttttgagtccaaaaaaattgatttagaaaaggagagaccaatttcgtaaata |
38826408 |
T |
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| Q |
336 |
agagactgaatttaccta--atatatatggtcattggtagatgttttagattat---aattaacannnnnnnngtaagcaacagatatttgcaatgccag |
430 |
Q |
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| T |
38826407 |
agagactgaatttacctataatatatatggtcattggaagatgttttatattattataattaacattttttt-gtaagcaacagatatttgcaatgccag |
38826309 |
T |
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| Q |
431 |
tgtttgacatgattgaaaccctcttggttaagcaaatggaatttgcacctacatttgcacttcgattatcagttcgcacactatatgttggtatgtctac |
530 |
Q |
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| T |
38826308 |
tgtttgacatgattgaaaccctcttggttaagcaaatggaatttgcacctacatttgcactccgattatcagttcgcacactatatgttggtatgtctac |
38826209 |
T |
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| Q |
531 |
ttgttgcactagatcaatgaaagcttcatccgttagttttttgttaactttttgatcttattttgtagcgttgaccatgctcattgc |
617 |
Q |
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| T |
38826208 |
ttgttgcactagatcaatgaaagcttcatccgttagttttttgttaactttttgatcttattttgtagcgttgaccatgttcattgc |
38826122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 133; E-Value: 8e-69
Query Start/End: Original strand, 17 - 188
Target Start/End: Complemental strand, 38826682 - 38826506
Alignment:
| Q |
17 |
catcctcatcacgctagagcatcctacttggctcattgccgctgctaacttgtttgttgttatccacgtcattggaggataccaggcgagtcaatgttaa |
116 |
Q |
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| T |
38826682 |
catcctcatcacgctagagcatcctacttggctcattgccgctgctaacttgtttgttgttatccacgtcattggaggataccaggcgagtcaatgttaa |
38826583 |
T |
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| Q |
117 |
-----nnnnnnnngttggtaaatgatgttaattaatttaatggttactatttcatttttaatgcttattgtaatttt |
188 |
Q |
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| T |
38826582 |
ttaatttgtttttgttggtaaatgatgttaattaatttaatggttactatttcatttttaatgcttattgtaatttt |
38826506 |
T |
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