View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11835_low_64 (Length: 361)
Name: NF11835_low_64
Description: NF11835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11835_low_64 |
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Alignment Details
Target: chr8 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 348
Target Start/End: Complemental strand, 549652 - 549305
Alignment:
| Q |
1 |
tccaagaccttcctcccaacattcccatcgcaacacaaacgaaactcacagttaaacactctatgccctatttgcatcaagaagttaacaaaatcgtaac |
100 |
Q |
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|||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
549652 |
tccaagaccttcctcccaacattcacatcgcaacacaaatgaaactcacagttaaacactctataccctatttgcatcaagaagttaacaaaatcgtaac |
549553 |
T |
|
| Q |
101 |
ttgttcaaaaacaaactttgttggtttggtttttgatcttttctcaagcgatgtaatcgacatcgctaaaaaattcaaccttatgtcttatattttcgct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
549552 |
ttgttcaaaaacaaactttgttggtttggtttttgatcttttctcaagtgatgtaatcgacatcgctaaaaaattcaaccttatgtcttatattttcgct |
549453 |
T |
|
| Q |
201 |
acttcatcagttatatcacttcaattctgtcttaatcttcccaaactagatgagagtgtttcctctgagttcatggacacaacaaaaacatttgacattc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
549452 |
acttcatcagttatatcacttcaattctgtcttaatcttcccaaactagatgagagtgtttcctttgagttcatggacacaacaaaaacatttgacattc |
549353 |
T |
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| Q |
301 |
cagattcaaatgtttcttttaaggtaaaagattttcctgaccctgttc |
348 |
Q |
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||| |||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
549352 |
cagtttcaaatgtttcttttaaggtaaatgattttcctgaccctgttc |
549305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 348
Target Start/End: Original strand, 23422976 - 23423323
Alignment:
| Q |
1 |
tccaagaccttcctcccaacattcccatcgcaacacaaacgaaactcacagttaaacactctatgccctatttgcatcaagaagttaacaaaatcgtaac |
100 |
Q |
| |
|
|||| ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |
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| T |
23422976 |
tccaggaccttcctcccaacattcacatcgcaacacaaatgaaactcacagttaaacactctataccctatttgcatcaagaagttaacaaaatggtaac |
23423075 |
T |
|
| Q |
101 |
ttgttcaaaaacaaactttgttggtttggtttttgatcttttctcaagcgatgtaatcgacatcgctaaaaaattcaaccttatgtcttatattttcgct |
200 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23423076 |
ttgttcaaaaacaaactttgtttgtttggtttttgatcttttctcaagcgatgtaatcgacatcgctaaaaaattcaaccttatgtcttatattttcgct |
23423175 |
T |
|
| Q |
201 |
acttcatcagttatatcacttcaattctgtcttaatcttcccaaactagatgagagtgtttcctctgagttcatggacacaacaaaaacatttgacattc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
23423176 |
acttcatcagttatatcacttcaattctgtcttaatcttcccaaactagatgagagtgtttcctttgagttcatggacacaacaaaaacatttgacattc |
23423275 |
T |
|
| Q |
301 |
cagattcaaatgtttcttttaaggtaaaagattttcctgaccctgttc |
348 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23423276 |
cagtttcaaatgtttcttttaaggtaaaagattttcctgaccctgttc |
23423323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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