View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11835_low_67 (Length: 347)
Name: NF11835_low_67
Description: NF11835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11835_low_67 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 290; Significance: 1e-163; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 17 - 339
Target Start/End: Original strand, 3217986 - 3218308
Alignment:
| Q |
17 |
agtttctggagtgagtccatgtagagattttgaagttnnnnnnngtggggccttgtgattggaacacttgaaaaggatgagagaaaaatacaagcagcaa |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3217986 |
agtttctggagtgagtccatgtagagattttgaagttaaagaaagtggggccttgtgattggaacacttgaaaaggatgagagaaaaatacaagcagcaa |
3218085 |
T |
|
| Q |
117 |
tttgatgttgaaagagtcttgaggagcaagatactatataatctatggtccacacttcacttcataatgactattcaacgtgggctcaagagaaaacatg |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
3218086 |
tttgatgttgaaagagtcttgaggagcaagatactatataatctatggtccacacttcacttcataatgactattcaacgtgggctcaagagaaaacacg |
3218185 |
T |
|
| Q |
217 |
ttcacaaggaagaaaattgttttgtaccacatgtttgctcaaaatctcttcaatgtatcagaatgtatcttccgatgacatgaatctatcggaagataca |
316 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3218186 |
ttcacaaggaagaaaattgttctgtaccacatgtttgctcaaaatctcttcaatgtatcagaatgtatcttccgatgacatgaatctatcggaagataca |
3218285 |
T |
|
| Q |
317 |
ttcagttttttcttcttcttctc |
339 |
Q |
| |
|
||||||||||| ||||||||||| |
|
|
| T |
3218286 |
ttcagtttttttttcttcttctc |
3218308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 61 - 116
Target Start/End: Original strand, 3223175 - 3223230
Alignment:
| Q |
61 |
gtggggccttgtgattggaacacttgaaaaggatgagagaaaaatacaagcagcaa |
116 |
Q |
| |
|
|||||||||||| |||||| | | ||||||||||| ||||||||||||||||||| |
|
|
| T |
3223175 |
gtggggccttgtagttggaatattggaaaaggatgaaagaaaaatacaagcagcaa |
3223230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 61 - 227
Target Start/End: Complemental strand, 49664783 - 49664619
Alignment:
| Q |
61 |
gtggggccttgtgattggaacacttgaaaaggatgagagaaaaatacaagcagcaatttgatgttgaaagagtcttgaggagcaagatactatataatct |
160 |
Q |
| |
|
|||||||| |||| ||| || ||| |||||||||| |||||||| |||||||||||||||| ||||||||||||||| ||| |||| || |||||| |
|
|
| T |
49664783 |
gtggggccatgtggttgaaatactggaaaaggatgggagaaaaaaacaagcagcaatttgacgttgaaagagtcttggggaataagacac--actaatct |
49664686 |
T |
|
| Q |
161 |
atggtccacacttcacttcataatgactattcaac-gtgggctcaagagaaaacatgttcacaaggaa |
227 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||| |||| ||| ||||||| |||||||||||| |
|
|
| T |
49664685 |
ttggttcacacttcacttcataa-gactattcaacaaagggcccaaaagaaaacgcgttcacaaggaa |
49664619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University