View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11835_low_68 (Length: 346)
Name: NF11835_low_68
Description: NF11835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11835_low_68 |
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Alignment Details
Target: chr3 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 11 - 330
Target Start/End: Complemental strand, 42212479 - 42212160
Alignment:
| Q |
11 |
cacagacaaagatgttcttctatcattcaaattacaagtaactgatccaaacaatgccttgtccagttggaaacaagattctaatcactgtacctggtac |
110 |
Q |
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| T |
42212479 |
cacagacaaagatattcttctatcattcaaattacaagtaactgatccaaacaatgccttgtccagttggaaacaagattctaatcattgtacctggtat |
42212380 |
T |
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| Q |
111 |
ggtgtcaactgttccaaagttgatgaaagagttcaatctctaaccttacggggacttggcctctcaggtaaactaccctctaacctctccaacctcactt |
210 |
Q |
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| T |
42212379 |
ggtgtcaactgttccaaagttgatgaaagagttcaatctctaaccttacggggacttggcctctctggtaaactaccctctaacctctccaacctcactt |
42212280 |
T |
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| Q |
211 |
accttcattcacttgacctttccaataacactctccatggccaaattccattccaattttctcatctctcactcctcaatgtcattcaattagctatgaa |
310 |
Q |
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|||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42212279 |
accttcattcacttgacctttccaataacacttttcatggccaaattccattccaattttctcatctctcactcctcaatgtcattcaattagctatgaa |
42212180 |
T |
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| Q |
311 |
cgatctcaatggtacacttc |
330 |
Q |
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|||||||||||| ||||||| |
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| T |
42212179 |
cgatctcaatggcacacttc |
42212160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 15 - 330
Target Start/End: Complemental strand, 42224691 - 42224376
Alignment:
| Q |
15 |
gacaaagatgttcttctatcattcaaattacaagtaactgatccaaacaatgccttgtccagttggaaacaagattctaatcactgtacctggtacggtg |
114 |
Q |
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| T |
42224691 |
gacaaagatattcttctatcattcaaattacaagtaactgatccaaacaatgctttgtccagttggaaacaagattctaatcattgtacctggtatggtg |
42224592 |
T |
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| Q |
115 |
tcaactgttccaaagttgatgaaagagttcaatctctaaccttacggggacttggcctctcaggtaaactaccctctaacctctccaacctcacttacct |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||| ||||||||||||||||||||||||| |
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| T |
42224591 |
tcaactgttccaaagttgatgaaagagttcaatctctaaccttatcaggacttaaactctctggtaaactaccccctaacctctccaacctcacttacct |
42224492 |
T |
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| Q |
215 |
tcattcacttgacctttccaataacactctccatggccaaattccattccaattttctcatctctcactcctcaatgtcattcaattagctatgaacgat |
314 |
Q |
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|||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42224491 |
tcattcacttgacctttccaataacacttttcatggccaaattccattccaattttctcatctctcactcctcaatgtcattcaattagctatgaacgat |
42224392 |
T |
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| Q |
315 |
ctcaatggtacacttc |
330 |
Q |
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|||||||| ||||||| |
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| T |
42224391 |
ctcaatggcacacttc |
42224376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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