View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11835_low_7 (Length: 634)
Name: NF11835_low_7
Description: NF11835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11835_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 494; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 16 - 603
Target Start/End: Original strand, 36006440 - 36007040
Alignment:
| Q |
16 |
caagatgtgacacaattcatgctgtggcagaagctgaaacttgctccagcatctttcagaagttcaacctacttgaagcacacttccttgagatcaatcc |
115 |
Q |
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| T |
36006440 |
caagatgtgacacaattcatgctgtggcagaagctgaaacttgctccagcatctttcagaagttcaacctacttgaagcacacttccttgagatcaatcc |
36006539 |
T |
|
| Q |
116 |
taacattaactgcgttggcatatttgtgggccaatgggtgtgtgttgagggtgaagtgaattgagttgtacctgctatcaaacttaattagatataagtc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36006540 |
taacattaactgcgttggcatatttgtgggccaatgggtgtgtgttgagggtgaagtgaattgagttgtacctgctatcaaacttaattagatataagtc |
36006639 |
T |
|
| Q |
216 |
taatggaatatatgtgcaataaggagagaaaccaacctttctccatacttatctatatgatatgtaatatgttctaatgaatgaatgtgaatgaaattac |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36006640 |
taatggaatatatgtgcaataaggagagaaaccaacctttctccatacttatctatatgatatgtaatatgttctaatgaatgaatgtgaatgaaattac |
36006739 |
T |
|
| Q |
316 |
atactccacttatctttgctgattgcagtcgattatgattgtccaaatccc--gtgtcatgggtcgtaatcccctctgttttcaatcttattgtcaatgg |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
36006740 |
gtactccacttatctttgctgattgcagtcgattatgattgtccaaatcccctgtgtcatgggtcgtaatcccctctgttttcaatcttattgtcaatag |
36006839 |
T |
|
| Q |
414 |
ttgaaaatca----------tcgttgggatcacactttattcat-----tcgtaatattcggaacccttgcattatggtgaaaatttcaatatatagacc |
498 |
Q |
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| T |
36006840 |
ttgaaaatcatcactttaagtcgttgggatcacactttattcatctggatcgtaatattcggaacccttacattatggtgaaaatttcaatatatagact |
36006939 |
T |
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| Q |
499 |
taattttgcatcgtgcatgcgcgccacatgtgccacttaagttggcttggcatgttttgaactatcagtatgcacgcgaacacatacacgtgtatcacac |
598 |
Q |
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||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |
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| T |
36006940 |
taattttgcattgtgcatgcgcgccacatgtgccacctaagttggcttggcatgttttgaactatcagt----acgcgaacacatacacatgtatcacac |
36007035 |
T |
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| Q |
599 |
acaaa |
603 |
Q |
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||||| |
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| T |
36007036 |
acaaa |
36007040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 20 - 261
Target Start/End: Original strand, 36009770 - 36010009
Alignment:
| Q |
20 |
atgtgacacaattcatgctgtggcagaagctgaaacttgctccagcatctttcagaagttcaacctacttgaagcacacttccttgagatcaatcctaac |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36009770 |
atgtgacacaattcatgctgtggcagaagctgaaacttgctccagcatcgttcaaaagttcaacctacttgaagcacacttccttgagatcaatcctaac |
36009869 |
T |
|
| Q |
120 |
attaactgcgttggcatatttgtgggccaatgggtgtgtgttgagggtgaagtgaattgagttgtacctgctatcaaacttaattagatataagtctaat |
219 |
Q |
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||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||| ||| ||||||||| |||| |||||| ||||||||| |
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| T |
36009870 |
attaactgcgttggcatctttgtgggccaatgggtatgtgttgaaggtgaagtgaattgagtt-tactcgctatcaaagttaactagatacaagtctaat |
36009968 |
T |
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| Q |
220 |
-ggaatatatgtgcaataaggagagaaaccaacctttctccat |
261 |
Q |
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| |||| |||| ||||||| ||||||||||||||||||||| |
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| T |
36009969 |
cgaaataaatgttcaataag--gagaaaccaacctttctccat |
36010009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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