View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11835_low_71 (Length: 337)
Name: NF11835_low_71
Description: NF11835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11835_low_71 |
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Alignment Details
Target: chr5 (Bit Score: 165; Significance: 3e-88; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 17 - 317
Target Start/End: Original strand, 10213029 - 10213338
Alignment:
| Q |
17 |
agcagagaaataaccagcattcagcgaaccggattcgcaaaagtttaagacgtaaataagcatataagttcgacaaaacaacaatttgcaatatttcaag |
116 |
Q |
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|||||||||||||| |||||| |||||| ||||| |||| ||||||| |||||||| |||||||||| |||||||||||||||||||||||| ||| |
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| T |
10213029 |
agcagagaaataacaggcattcgacgaacctgattcagaaaattttaagatgtaaataaacatataagtttaacaaaacaacaatttgcaatatttaaag |
10213128 |
T |
|
| Q |
117 |
agaatgaaattaaggtatttagaaattttaagaaacggcctcataaatcc-tttaaaacttaaataaatgcaacctttgacagaagcacgacaacaaaag |
215 |
Q |
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||||||||||| || ||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
10213129 |
agaatgaaatttagatatttagaaattttaagaaacggccgcctaaatccctttaaaacttaaataaatgcaacctttgacagaagcacggcgacaaaag |
10213228 |
T |
|
| Q |
216 |
gcttgtgttagttctccttcaccataaataggataaagtaaagcccccg--------gtgcactcggaaaccggaaagaacaaagataactatcttttga |
307 |
Q |
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|||||||||||||||||||||||||| ||||||||||| |||||||||| ||||||||| || ||| |||| |||||||||| |||||||| | |
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| T |
10213229 |
gcttgtgttagttctccttcaccatagataggataaagcaaagcccccggtcacccagtgcactcgcaacccgaaaaggacaaagataagtatcttttta |
10213328 |
T |
|
| Q |
308 |
aaaatattaa |
317 |
Q |
| |
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|||||||||| |
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| T |
10213329 |
aaaatattaa |
10213338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 105 - 318
Target Start/End: Original strand, 9677191 - 9677404
Alignment:
| Q |
105 |
caatatttcaagagaatgaaattaaggtatttagaaattttaagaaacggcctcataaatcctttaaaacttaaataaatgcaacctttgacagaagcac |
204 |
Q |
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| T |
9677191 |
caatatttaaagagagtgaaattaaggtatttataaattttaagaaacagcctcataaatcctttaaaacttacataaatgtgacctttgacagcagtat |
9677290 |
T |
|
| Q |
205 |
gacaacaaaaggcttgtgttagttctccttcaccataaataggataaagtaaagcccccggtgcactcggaaaccggaaagaacaaagataactatcttt |
304 |
Q |
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||| || || ||||||||| |||||||||||||||||||||||||||| |||||||| |||||| ||||||||||||||| |||||||||| ||||||| |
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| T |
9677291 |
gacggcagaaagcttgtgttggttctccttcaccataaataggataaagcaaagcccctggtgcattcggaaaccggaaaggacaaagataagtatcttt |
9677390 |
T |
|
| Q |
305 |
tgaaaaatattaac |
318 |
Q |
| |
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||||||| |||||| |
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| T |
9677391 |
tgaaaaacattaac |
9677404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 114 - 313
Target Start/End: Original strand, 12105294 - 12105493
Alignment:
| Q |
114 |
aagagaatgaaattaaggtatttagaaattttaagaaacggcctcataaatcctttaaaacttaaataaatgcaacctttgacagaagcacgacaacaaa |
213 |
Q |
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||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| || |||||||| |||| |||||| || || || ||||| |
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| T |
12105294 |
aagagaatgaaattaagatatttagaaattttaagaaacagcctcataaatcctttaaaacatacataaatgcgacctatgacagcagtacaacgacaaa |
12105393 |
T |
|
| Q |
214 |
aggcttgtgttagttctccttcaccataaataggataaagtaaagcccccggtgcactcggaaaccggaaagaacaaagataactatcttttgaaaaata |
313 |
Q |
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|||||| | |||||||||||||||||||| |||||||||| |||||||| |||||| ||||||||||||||| |||||| ||| |||||||||||||||| |
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| T |
12105394 |
aggcttcttttagttctccttcaccataagtaggataaagcaaagcccctggtgcattcggaaaccggaaaggacaaagttaattatcttttgaaaaata |
12105493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 157 - 317
Target Start/End: Original strand, 9683918 - 9684077
Alignment:
| Q |
157 |
tcataaatcctttaaaacttaaataaatgcaacctttgacagaagcacgacaacaaaaggcttgtgttagttctccttcaccataaataggataaagtaa |
256 |
Q |
| |
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|||||||||||||||| |||| |||||||||||||||||||| |||||||| |||||| ||||||| |||||| ||||||||||||||||||||||| || |
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| T |
9683918 |
tcataaatcctttaaa-cttacataaatgcaacctttgacagcagcacgacgacaaaaagcttgtggtagttccccttcaccataaataggataaagcaa |
9684016 |
T |
|
| Q |
257 |
agcccccggtgcactcggaaaccggaaagaacaaagataactatcttttgaaaaatattaa |
317 |
Q |
| |
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||||||||| ||| | ||| ||| |||| ||||||||||| |||| |||||||||||||| |
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| T |
9684017 |
agcccccggggcattgggatacctgaaaaaacaaagataagtatcagttgaaaaatattaa |
9684077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 189 - 318
Target Start/End: Original strand, 9675660 - 9675797
Alignment:
| Q |
189 |
cctttgacagaagcacgacaacaaaaggcttgtgttag--------ttctccttcaccataaataggataaagtaaagcccccggtgcactcggaaaccg |
280 |
Q |
| |
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|||| ||||| |||||||| |||||||||||||||||| |||||||||||||||| ||||||||| |||| |||||||||| ||||||| | |
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| T |
9675660 |
ccttagacagcagcacgacgacaaaaggcttgtgttagactattagttctccttcaccataagtaggataaatcaaagtccccggtgcattcggaaatct |
9675759 |
T |
|
| Q |
281 |
gaaagaacaaagataactatcttttgaaaaatattaac |
318 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||| |
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| T |
9675760 |
gaaagaacaaagataagtatcttttgaaaaatattaac |
9675797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 156 - 258
Target Start/End: Original strand, 10211009 - 10211111
Alignment:
| Q |
156 |
ctcataaatcctttaaaacttaaataaatgcaacctttgacagaagcacgacaacaaaaggcttgtgttagttctccttcaccataaataggataaagta |
255 |
Q |
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|||||||||||| ||||||||| ||||||||||||||||| || |||||||| |||||| |||||| ||||| ||||||||||||||||||| |||||| |
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| T |
10211009 |
ctcataaatcctataaaacttacataaatgcaacctttgatagcagcacgacgacaaaaagcttgtcgtagttttccttcaccataaataggacaaagta |
10211108 |
T |
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| Q |
256 |
aag |
258 |
Q |
| |
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||| |
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| T |
10211109 |
aag |
10211111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 17 - 158
Target Start/End: Original strand, 9675527 - 9675660
Alignment:
| Q |
17 |
agcagagaaataaccagcattcagcgaaccggattcgcaaaagtttaagacgtaaataagcatataagttcgacaaaacaacaatttgcaatatttcaag |
116 |
Q |
| |
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|||||||| |||||| |||||| |||||| ||||| ||||||||||||| ||||||||||||||||||| ||||||| ||||||||| ||| |
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| T |
9675527 |
agcagagatataaccggcattcgtcgaacctgattcacaaaagtttaagatgtaaataagcatataagtt--------caacaatatgcaatattaaaag |
9675618 |
T |
|
| Q |
117 |
agaatgaaattaaggtatttagaaattttaagaaacggcctc |
158 |
Q |
| |
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|||||||||||||||||||| ||||||| |||||| |||||| |
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| T |
9675619 |
agaatgaaattaaggtatttggaaatttaaagaaaaggcctc |
9675660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 17 - 112
Target Start/End: Complemental strand, 10105245 - 10105150
Alignment:
| Q |
17 |
agcagagaaataaccagcattcagcgaaccggattcgcaaaagtttaagacgtaaataagcatataagttcgacaaaacaacaatttgcaatattt |
112 |
Q |
| |
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|||||||||||||| ||||| ||||||| ||||| ||||| ||||||| ||| ||||||||| | |||| |||||||||||||||||||||||| |
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| T |
10105245 |
agcagagaaataacaggcatttggcgaacctgattcacaaaattttaagatgtacataagcatacatgttcaacaaaacaacaatttgcaatattt |
10105150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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