View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11835_low_72 (Length: 333)
Name: NF11835_low_72
Description: NF11835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11835_low_72 |
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Alignment Details
Target: chr7 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 317
Target Start/End: Complemental strand, 42447906 - 42447590
Alignment:
| Q |
1 |
tcaaaacgatgatattgtactatatcaatgagatagcaaaaagtaaaaactcccaaatccatcatagaacaaaattcagttctctctaacattatctatg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42447906 |
tcaaaacgatgatattgtactatatcaatgagatagcaaaaagtaaaaactcccaaatccatcatagaacaaaattcagttctctctaacattatctatg |
42447807 |
T |
|
| Q |
101 |
aaaatctctgttccatatcaccgaaagtccaaaaacactaaaattacaatgtatcacgaccatataaaagcataagatgcgaaaaaccagaccaagtaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42447806 |
aaaatctctgttccatatcaccgaaagtccaaaaacactaaaattacaatgtatcacgaccatataaaagcataagatgcgaaaaaccagaccaagtaac |
42447707 |
T |
|
| Q |
201 |
aggctattccaagccttgattgcccaaccactgcatagaattagaaaataccaacttaagtggtccagcatgccgaaaatcatcaacatcacatgcacaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42447706 |
aggctattccaagccttgattgcccaaccactgcatagaattagaaaataccaacttaagtggtccagcatgccgaaaatcatcaacatcacatgcacaa |
42447607 |
T |
|
| Q |
301 |
aatgctgcctgttaaag |
317 |
Q |
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||||||||||||||||| |
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| T |
42447606 |
aatgctgcctgttaaag |
42447590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 183 - 240
Target Start/End: Complemental strand, 26171045 - 26170988
Alignment:
| Q |
183 |
aaaaccagaccaagtaacaggctattccaagccttgattgcccaaccactgcatagaa |
240 |
Q |
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| T |
26171045 |
aaaaccataccaagtaacatgttgttccaagccttgattgcccaaccactacatagaa |
26170988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 142 - 197
Target Start/End: Complemental strand, 29014809 - 29014754
Alignment:
| Q |
142 |
aattacaatgtatcacgaccatataaaagcataagatgcgaaaaaccagaccaagt |
197 |
Q |
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|||||||| |||| ||||||||||||||||| ||||| |||||||||||| |||| |
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| T |
29014809 |
aattacaacgtattacgaccatataaaagcacaagataggaaaaaccagacgaagt |
29014754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 240
Target Start/End: Original strand, 6613293 - 6613326
Alignment:
| Q |
207 |
ttccaagccttgattgcccaaccactgcatagaa |
240 |
Q |
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|||||||||||||||||||||||||| ||||||| |
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|
| T |
6613293 |
ttccaagccttgattgcccaaccactacatagaa |
6613326 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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