View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11835_low_73 (Length: 327)
Name: NF11835_low_73
Description: NF11835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11835_low_73 |
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| [»] scaffold1019 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 324
Target Start/End: Original strand, 17831105 - 17831428
Alignment:
| Q |
1 |
aactgctgctttgatctctgcttgtgtcgggagcatggtaagcaatttgtttgtgttgtcatcaataagctttggaataacttcttcgacaagaacctgt |
100 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17831105 |
aactgttgctttgatctctgcttgtgtcgggagcatggtaagcaatttgtttgtgttgtcatcaataagctttggaataacttcttcgacaagaacctgt |
17831204 |
T |
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| Q |
101 |
tcctgcaaaacatggttagtacaaaataagtttttgaaataatcaacaatgtgttcagatatttgttgtgggtcactgatcaaatcctcaccaactctca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17831205 |
tcctgcaaaacatggttagtacaaaataagtttttgaaataatcaacaatgtgttcagatatttgttgtgggtcactgatcaaatcctcaccaactctca |
17831304 |
T |
|
| Q |
201 |
aacaagtaannnnnnnngtcttgtttttgatttgtgaaagtctgtgaaaatagccggtgtttctatcaccctccaaatgccacttaactttagatttttc |
300 |
Q |
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| T |
17831305 |
aactagtaattttttttgtcttatttttgatttgtgaaagtctgtgaaaatagccagtgtttctatcaccctccaaatgccacttaactttagatttttc |
17831404 |
T |
|
| Q |
301 |
tctccaaaagctttcttctctctc |
324 |
Q |
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| T |
17831405 |
tctccaaaagctttcttgtctctc |
17831428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 2 - 324
Target Start/End: Original strand, 11179172 - 11179494
Alignment:
| Q |
2 |
actgctgctttgatctctgcttgtgtcgggagcatggtaagcaatttgtttgtgttgtcatcaataagctttggaataacttcttcgacaagaacctgtt |
101 |
Q |
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| T |
11179172 |
actgcagctttgatctcagcatgtgtggggagcatagttagcagattattggtgttgtcgtcaatcaaatttggaatgacctcttccacaagcaatgaat |
11179271 |
T |
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| Q |
102 |
cctgcaaaacatggttagtacaaaataagtttttgaaataatcaacaatgtgttcagatatttgttgtgggtcactgatcaaatcctcaccaactctcaa |
201 |
Q |
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||||||||| | ||||||||||||| || |||| ||||||| ||||||||||| || ||||| | | || | | |||| |||| |||||||||| |
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| T |
11179272 |
cctgcaaaatagggttagtacaaaacaaattttcaaaataattgacaatgtgttccgaaatttgattagtatctgtaagtaaattctcatcaactctcaa |
11179371 |
T |
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| Q |
202 |
acaagtaannnnnnnngtcttgtttttgatttgtgaaagtctgtgaaaatagccggtgtttctatcaccctccaaatgccacttaactttagatttttct |
301 |
Q |
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| T |
11179372 |
gctagtaataagctttgttttgtttttgatttgagaaagtctgtgaaaatatgatgtgttcctatcaccttccacatgccacttagctttagctttctct |
11179471 |
T |
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| Q |
302 |
ctccaaaagctttcttctctctc |
324 |
Q |
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||| | || ||||||| |||||| |
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| T |
11179472 |
ctctataaactttcttgtctctc |
11179494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 28714286 - 28714158
Alignment:
| Q |
1 |
aactgctgctttgatctctgcttgtgtcgggagcatggtaagcaatttgtttgtgttgtcatcaataagctttggaataacttcttcgacaagaacctgt |
100 |
Q |
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||||||||||||||| || | ||||| || ||||| || |||| | ||| |||||||| |||| ||| || |||||||||||||| |||| | ||| |
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| T |
28714286 |
aactgctgctttgatttcatcatgtgtaggtagcatagtgagcatctggttggtgttgtcttcaacaagtttgggaataacttcttctgcaagcaagtgt |
28714187 |
T |
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| Q |
101 |
tcctgcaaaacatggttagtacaaaataa |
129 |
Q |
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| T |
28714186 |
tcctgcaataaagggttagtacaaaataa |
28714158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 16487918 - 16487790
Alignment:
| Q |
1 |
aactgctgctttgatctctgcttgtgtcgggagcatggtaagcaatttgtttgtgttgtcatcaataagctttggaataacttcttcgacaagaacctgt |
100 |
Q |
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||||||||||||||| || | ||||| || ||||| || |||| | ||| |||||||| |||| ||| || |||||||||||||| |||| | ||| |
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| T |
16487918 |
aactgctgctttgatttcatcatgtgtaggtagcatagtgagcatctggttggtgttgtcttcaacaagtttgggaataacttcttctgcaagcaagtgt |
16487819 |
T |
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| Q |
101 |
tcctgcaaaacatggttagtacaaaataa |
129 |
Q |
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| T |
16487818 |
tcctgcaataaagggttagtacaaaataa |
16487790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1019 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1019
Description:
Target: scaffold1019; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 135
Target Start/End: Original strand, 1325 - 1370
Alignment:
| Q |
90 |
caagaacctgttcctgcaaaacatggttagtacaaaataagttttt |
135 |
Q |
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| T |
1325 |
caagtacctgatcctgcaaaacaaggttagtacaaaacaagttttt |
1370 |
T |
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