View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11835_low_75 (Length: 325)
Name: NF11835_low_75
Description: NF11835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11835_low_75 |
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Alignment Details
Target: chr5 (Bit Score: 291; Significance: 1e-163; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 307
Target Start/End: Complemental strand, 13379278 - 13378972
Alignment:
| Q |
1 |
caaggtgacaaacatcaaagttggagataaggttggtgtggggtgcatggttggatcctgccattcatgtcaaagttgtggcgaggatctcgaaaattac |
100 |
Q |
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|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13379278 |
caaggtgaaaaacatcaaagttggagatagggttggtgtggggtgcatggttggatcctgccattcatgtcaaagttgtggcgaggatctcgaaaattat |
13379179 |
T |
|
| Q |
101 |
tgctcaaagatgattcagacatacagttccaagaatgttgatggcactatcacatatggaggctactctgacaccatggttgtcgacgaacactttattg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13379178 |
tgctcaaagatgattcagacatacagttccaagaatgttgatggcactatcacatatggaggctactctgacaccatggttgtcgacgaacactttattg |
13379079 |
T |
|
| Q |
201 |
tccgtattcccgatgccttatcacttgatgctgccgctcctctcctttgtgctgggatcacagtgtatagcccaatgaaacattttggattagacaaacc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
13379078 |
tccgtattcccgatgccttatcacttgatgctgccgctcctctcctttgtgctgggatcacagtgtatagcccaatgaaacattttggatttgacaaacc |
13378979 |
T |
|
| Q |
301 |
tggactg |
307 |
Q |
| |
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||||||| |
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| T |
13378978 |
tggactg |
13378972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 4 - 289
Target Start/End: Complemental strand, 13373479 - 13373194
Alignment:
| Q |
4 |
ggtgacaaacatcaaagttggagataaggttggtgtggggtgcatggttggatcctgccattcatgtcaaagttgtggcgaggatctcgaaaattactgc |
103 |
Q |
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||||||||| ||||||||||||| ||||| ||||| ||||||||||||||||||||||| ||||||||||||||||| || |||||||| ||||| ||| |
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| T |
13373479 |
ggtgacaaagttcaaagttggagacaaggtaggtgtagggtgcatggttggatcctgccactcatgtcaaagttgtggtgatgatctcgagaattattgc |
13373380 |
T |
|
| Q |
104 |
tcaaagatgattcagacatacagttccaagaatgttgatggcactatcacatatggaggctactctgacaccatggttgtcgacgaacactttattgtcc |
203 |
Q |
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| T |
13373379 |
tcaaagatgatcctcacatatggcgccaagaatattgatggaacaatcacatatggaggctactctgataccatggttgcccacgaacacttcgtgatcc |
13373280 |
T |
|
| Q |
204 |
gtattcccgatgccttatcacttgatgctgccgctcctctcctttgtgctgggatcacagtgtatagcccaatgaaacattttgga |
289 |
Q |
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||||||| ||||||||| |||||||||| || |||||||| |||||||| ||||||||||| |||||||| ||||| |||||||| |
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| T |
13373279 |
gtattcctgatgccttaccacttgatgccgctgctcctcttctttgtgcggggatcacagtatatagccctttgaaatattttgga |
13373194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 139 - 270
Target Start/End: Complemental strand, 13419602 - 13419471
Alignment:
| Q |
139 |
tgatggcactatcacatatggaggctactctgacaccatggttgtcgacgaacactttattgtccgtattcccgatgccttatcacttgatgctgccgct |
238 |
Q |
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||||||||| ||||||||||||| ||||| ||| | ||||||| ||||| |||||| | | || ||||| ||| |||| | ||||||||||||| | |
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| T |
13419602 |
tgatggcaccgtcacatatggaggttactccgactcaatggttgcagacgagcactttgtgattcgcattcctgatagcttacctcttgatgctgccggt |
13419503 |
T |
|
| Q |
239 |
cctctcctttgtgctgggatcacagtgtatag |
270 |
Q |
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||||| ||||| ||||| |||||||||||||| |
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| T |
13419502 |
cctcttctttgcgctggaatcacagtgtatag |
13419471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 149 - 270
Target Start/End: Original strand, 13393562 - 13393683
Alignment:
| Q |
149 |
atcacatatggaggctactctgacaccatggttgtcgacgaacactttattgtccgtattcccgatgccttatcacttgatgctgccgctcctctccttt |
248 |
Q |
| |
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|||||||||||||| ||||||||| | ||||||| || || |||||||| || | ||||| |||| |||| ||||||| |||| ||||||||||||| |
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| T |
13393562 |
atcacatatggagggtactctgactcaatggttgcagatgagcactttatagttcacattcctgatggcttaccacttgaatctgctgctcctctccttt |
13393661 |
T |
|
| Q |
249 |
gtgctgggatcacagtgtatag |
270 |
Q |
| |
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|||| || || || |||||||| |
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| T |
13393662 |
gtgccggtattactgtgtatag |
13393683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 139 - 270
Target Start/End: Complemental strand, 13447153 - 13447022
Alignment:
| Q |
139 |
tgatggcactatcacatatggaggctactctgacaccatggttgtcgacgaacactttattgtccgtattcccgatgccttatcacttgatgctgccgct |
238 |
Q |
| |
|
||||||||||||||| |||||||| | ||| ||| | ||||||| ||||| |||||| | | || ||||| ||| |||| | ||||||| ||||| | |
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| T |
13447153 |
tgatggcactatcacctatggaggtttctccgactcaatggttgcagacgagcactttgtgattcgcattcctgatagcttacctcttgatggtgccggt |
13447054 |
T |
|
| Q |
239 |
cctctcctttgtgctgggatcacagtgtatag |
270 |
Q |
| |
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||||| ||||| ||||| ||||||||||||| |
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| T |
13447053 |
cctcttctttgcgctggagtcacagtgtatag |
13447022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 267
Target Start/End: Original strand, 13385407 - 13385452
Alignment:
| Q |
222 |
cacttgatgctgccgctcctctcctttgtgctgggatcacagtgta |
267 |
Q |
| |
|
||||||| ||||| || ||||||||||||||||||||||| ||||| |
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| T |
13385407 |
cacttgaagctgctgcacctctcctttgtgctgggatcactgtgta |
13385452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 267
Target Start/End: Original strand, 13389228 - 13389273
Alignment:
| Q |
222 |
cacttgatgctgccgctcctctcctttgtgctgggatcacagtgta |
267 |
Q |
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||||||| ||||| || ||||||||||||||||||||||| ||||| |
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| T |
13389228 |
cacttgaagctgctgcacctctcctttgtgctgggatcactgtgta |
13389273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 15 - 289
Target Start/End: Original strand, 28430404 - 28430678
Alignment:
| Q |
15 |
tcaaagttggagataaggttggtgtggggtgcatggttggatcctgccattcatgtcaaagttgtggcgaggatctcgaaaattactgctcaaagatgat |
114 |
Q |
| |
|
||||||||||||| ||||| ||||| |||||||||||| ||||||||| ||||| |||| ||| ||| ||||||||||||||| |||| |||| |
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| T |
28430404 |
tcaaagttggagacaaggtaggtgttgggtgcatggttcaatcctgccactcatgccaaaattgcaacgaaagtctcgaaaattactgtccaaaagtgat |
28430503 |
T |
|
| Q |
115 |
tcagacatacagttccaagaatgttgatggcactatcacatatggaggctactctgacaccatggttgtcgacgaacactttattgtccgtattcccgat |
214 |
Q |
| |
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|| |||||| ||||||||||| |||||||||| |||||||||||||||||||| ||||| ||||| ||||||| |||| | || | ||||| || |
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| T |
28430504 |
tctcacatacggttccaagaatcttgatggcaccatcacatatggaggctactccgacacaatggtcaccgacgaaagctttgtgatcagcattccaaat |
28430603 |
T |
|
| Q |
215 |
gccttatcacttgatgctgccgctcctctcctttgtgctgggatcacagtgtatagcccaatgaaacattttgga |
289 |
Q |
| |
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| || | ||||||||||| ||||||||||| || || |||||||| ||||||||||| ||||| |||||||| |
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| T |
28430604 |
agcctacctcttgatgctgcagctcctctcctctgcgccgggatcacggtgtatagccctttgaaatattttgga |
28430678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 139 - 270
Target Start/End: Complemental strand, 47601424 - 47601293
Alignment:
| Q |
139 |
tgatggcactatcacatatggaggctactctgacaccatggttgtcgacgaacactttattgtccgtattcccgatgccttatcacttgatgctgccgct |
238 |
Q |
| |
|
||||||||| | |||||| ||||| ||||||||| | |||||||| ||||| |||||| | || | |||||||||| || ||||||| ||| | ||| |
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| T |
47601424 |
tgatggcaccaccacatacggaggttactctgactcaatggttgtagacgagcactttgtggttcacattcccgatggtttgccacttgaagctactgct |
47601325 |
T |
|
| Q |
239 |
cctctcctttgtgctgggatcacagtgtatag |
270 |
Q |
| |
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||||| |||||||| || |||||||||||||| |
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|
| T |
47601324 |
cctcttctttgtgccggtatcacagtgtatag |
47601293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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